diff --git a/Jorunal /fichier-markdown.md b/Jorunal /fichier-markdown.md index 50892d66d243a72c567a6445f3dca637ae512aca..82cb973b868cd50cb28f953095751e25ac42b323 100644 --- a/Jorunal /fichier-markdown.md +++ b/Jorunal /fichier-markdown.md @@ -1,2 +1,280 @@ -#__Logbook of JAIRO ANDRÉS CAMAÑO ECHAVARRIA__ +# __Logbook of JAIRO ANDRÉS CAMAÑO ECHAVARRIA__ + +# __MODULE 1__ + +Important notes + + + + + + + + + + + + + + +## QUIZ 01 + +1. Why has a European project recently used the logbooks of the Portuguese, Spanish, Dutch and English Indian Companies (Cf. Christophe Pouzat video : Note-taking concerns everyone) ? + +To try to reconstitute the ocean climate criss-crossed by the Western navies + +2. What note media are illustrated in the course video "Note-taking concerns everyone" by Christophe Pouzat? + +Notes in books and manuscripts margins +Notes in field books +Notes on cards and paper slips + +3. Why did Leibniz order the construction of a closet ? + +To store and order notes written on paper slips + +4. For the curious, visit the Darwin Online web sites go to the notebooks and describe how Darwin took his notes. + +First in notebooks then on cards and paper sheets stored in folders + + +## QUIZ 02 + +1. What is the origin of the codex? + +The Egyptian production of papyrus was not large enough to meet the demand of writers + +2. What aspect of Eusebius work is presented in this sequence? + +His canon tables (cross-references between the Gospel books) + +3. In which line should the keyword "Analysis" go in John Locke's index ? + +« Aa » c. « Aa » + + +## QUIZ 03 + +1. What is a text file ? + +A file made up (stored as) UTF-8 characters + +2. What is a tag ? + +A character, or series of characters, used to structure a document that will be invisible to the final reader + +3. Markdown is a markup language + +Light + + +## QUIZ 04 + +1. LibreOffice makes the comparison of two successive versions possible. + +True + +2. A wiki engine allows us to modify a single page at a time + +True + +3. GitHub and GitLab let us work with binary files like images. + +True + +## QUIZ 05 + +1. What are the limitations of the search functionality of text editors ? + +They only work with text files + +They work on a single file at a time + +2. What is DocFetcher ? + +A cross-plateform software + +A desktop search engine + +3. What does it make sense to use tags and keywords ? + +To filter out overabundant information + +To find quickly relevant information + + +# __EXERCISE 01__ + +# __Partie 1__ + +## __Sous-partie 1: texte__ + +Une phrase sans rien + +*Une pharse en italique* + +__Une phrase en gras__ + +Un lien vers +[fun-mooc](http://fun-mooc.fr) + +Une ligne de `code` + +## __Sous-partie 2: Listes__ + +Liste à puce + +- Item + - Sous-item + - Sous-item +- Item +- Item + + + +Liste numérotée +1. item +2. item +3. item + +## __Sous-partie 3: code__ +``` +# Extrait de code +``` + + +# __MODULE 2_ + +## QUIZ 06 + +1. A computational document allows you to + +Improve the traceability of a calculation +Easily present your work to colleagues +Access all the calculations underlying an analysis + +2. Which environment(s) are presented to you in this MOOC? + +Rstudio +Emacs/OrgMode +Jupyter + +3. Which environment is recommended if your preferred language is Python? + +Jupyter + +4. Which environment is recommended if your preferred language is the R language? + +Rstudio + +5. Which environment is used daily by the three authors of this MOOC? + +Emacs/OrgMode + +## QUIZ 07 + +1. In the studies we have presented to you, what prevents, sometimes for several years, the debate on the relevance of a study? + +Unpublished computation procedures +Data used in the study was not released + +2. In the various examples presented (economics, MRI, crystallography), what are the main causes of errors ? + +Data acquisition (bias, machine calibration, etc.) +Computation errors +Inadequate data processing or statistics + +3. What are the consequences of lack of transparency? (4 expected responses) + +It's difficult to rely on the work of others + Articles contain less information (no details on calculations, experimental protocols, data analysis, etc.) and are therefore easier to read + It is difficult to verify and reproduce the analyses presented in the articles + Two articles may present results that seem to contradict each other, but are both perfectly correct, as the lack of detail prevents the exact conditions of application from being determined + + ## QUIZ 08 + + 1. What are the main technical causes behind the difficulties in reproducing someone else's work? (4 expected responses) + +Lack of documentation on the choices made: +Interactive graphical software that hide computation details +Computation errors +Data loss (no backup or no more readable format) + +2. Which solutions are mentioned? (3 expected responses) + +Using a laboratory notebook +Code review and continuous integration +Using version control systems and several backup mechanisms + + +3.What are the most legitimate/valid fears associated with the systematic disclosure of data (open data) (2 expected responses)? + +This list of risks is of course not deliberately exhaustive...: + +## QUIZ 10 + +1. What is commonly found in a computational document? + +Commentaries +Code +An overview of data +Computational results +Hypertext links +Images + +2. What does a computational document allow? + +Inspect the computations +Easily re-run the computations if the original environment is available +Document the code +Explain why a particular computation is made based on the data analysis so far +Use multiple languages to perform computations (even if it may require some work) + + + +## QUIZ P 01 + +1. What does an environment like Jupyter provide in comparison to working in the Python console or running R scripts directly? + +It provides a well-structured history of the analyses performed. +It allows you to inspect data, keep a history of this inspection, and explain the transformations you perform as you go along +It saves intermediate results, whether textual or graphical +It allows you to generate documents in HTML or PDF +It allows you to ensure that a figure is the result of the computation described in the document. + + +2. In Jupyter, what features are provided for the Python language but not available for the R language? +N.B.: You may want to try it out by yourself by opening a Jupyter notebook via the big button under the previous video. You can switch from Python to R through the Jupyter menu (Kernel->Change Kernel->R). + +There are the same features for both languages + + 3. What allows you to be effective in an environment like Jupyter? + +The export functions and the ability to easily re-run the code from the beginning +Autocompletion +Learning keyboard shortcuts +Reading the documentation and cheat sheets + + + + + + + + + + + + + + + + + + + + + + +