diff --git a/journal/logbook_RR_MOOC.md b/journal/logbook_RR_MOOC.md index d2250f2e6c94efe4bb474df7ea6cee3e0ddd7311..980a006ac2b4b1fe5be1676339705d725f8ef594 100644 --- a/journal/logbook_RR_MOOC.md +++ b/journal/logbook_RR_MOOC.md @@ -3,7 +3,7 @@ This logbook will contain the main points I learnt and found useful in this MOOC, as well as some usefull references and resources. -## Module 1 +## Module 1: note books and lab books ### 20.03.20 - 24.03.20 @@ -27,3 +27,23 @@ Things I would like to figure out: * what is this "No wrap"/"Soft wrap" button? *It just does automatic cut of the lines si everything can fit on the screen* **There is an obvious lack of structure in this section!** + +## Module 2: computational documents + +### 25.03.20 + +What is needed for a study to be reproducible? + +* The data should and the way they were collected should be available +* Each choice made in the methodology should be explained justified : all this should be ketp in the lab book + +Le clique boutton, les tableurs et les logiciels propriétaires c'est pas top! + +**Be organized, and store your data, randomize your experimental design, use text format, use free software!** + +It sunny and I just realised that I can ear the church bell from my garden. Ah yeah, btw... COVID-19 + +#### Rstudio tutorial +I choose to follow the Rstudio tutorial even if I already know how to produce Rmarkdown files, but it would be cool to try later OrgMode, so that I could use Emacs to do eveything (while fore now I am only using it to produce Latex documents). + +Something I didn't know: when you use another langage than R (for example when I use some pieces of bash/python for OBITOOLS pipelines), the variables generated in a chunck are not kept in memory and cannot be used from one chunk to another (which is the case for R code).