diff --git a/module2/exo1/GC exo.ipynb b/module2/exo1/GC exo.ipynb new file mode 100644 index 0000000000000000000000000000000000000000..43accc51258bf387e908b95b18b9bdb6bd3babf8 --- /dev/null +++ b/module2/exo1/GC exo.ipynb @@ -0,0 +1,151 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": 1, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "(14.0,\n", + " 7.6,\n", + " 11.2,\n", + " 12.8,\n", + " 12.5,\n", + " 9.9,\n", + " 14.9,\n", + " 9.4,\n", + " 16.9,\n", + " 10.2,\n", + " 14.9,\n", + " 18.1,\n", + " 7.3,\n", + " 9.8,\n", + " 10.9,\n", + " 12.2,\n", + " 9.9,\n", + " 2.9,\n", + " 2.8,\n", + " 15.4,\n", + " 15.7,\n", + " 9.7,\n", + " 13.1,\n", + " 13.2,\n", + " 12.3,\n", + " 11.7,\n", + " 16.0,\n", + " 12.4,\n", + " 17.9,\n", + " 12.2,\n", + " 16.2,\n", + " 18.7,\n", + " 8.9,\n", + " 11.9,\n", + " 12.1,\n", + " 14.6,\n", + " 12.1,\n", + " 4.7,\n", + " 3.9,\n", + " 16.9,\n", + " 16.8,\n", + " 11.3,\n", + " 14.4,\n", + " 15.7,\n", + " 14.0,\n", + " 13.6,\n", + " 18.0,\n", + " 13.6,\n", + " 19.9,\n", + " 13.7,\n", + " 17.0,\n", + " 20.5,\n", + " 9.9,\n", + " 12.5,\n", + " 13.2,\n", + " 16.1,\n", + " 13.5,\n", + " 6.3,\n", + " 6.4,\n", + " 17.6,\n", + " 19.1,\n", + " 12.8,\n", + " 15.5,\n", + " 16.3,\n", + " 15.2,\n", + " 14.6,\n", + " 19.1,\n", + " 14.4,\n", + " 21.4,\n", + " 15.1,\n", + " 19.6,\n", + " 21.7,\n", + " 11.3,\n", + " 15.0,\n", + " 14.3,\n", + " 16.8,\n", + " 14.0,\n", + " 6.8,\n", + " 8.2,\n", + " 19.9,\n", + " 20.4,\n", + " 14.6,\n", + " 16.4,\n", + " 18.7,\n", + " 16.8,\n", + " 15.8,\n", + " 20.4,\n", + " 15.8,\n", + " 22.4,\n", + " 16.2,\n", + " 20.3,\n", + " 23.4,\n", + " 12.1,\n", + " 15.5,\n", + " 15.4,\n", + " 18.4,\n", + " 15.7,\n", + " 10.2,\n", + " 8.9,\n", + " 21.0)" + ] + }, + "execution_count": 1, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "14.0, 7.6, 11.2, 12.8, 12.5, 9.9, 14.9, 9.4, 16.9, 10.2, 14.9, 18.1, 7.3, 9.8, 10.9,12.2, 9.9, 2.9, 2.8, 15.4, 15.7, 9.7, 13.1, 13.2, 12.3, 11.7, 16.0, 12.4, 17.9, 12.2, 16.2, 18.7, 8.9, 11.9, 12.1, 14.6, 12.1, 4.7, 3.9, 16.9, 16.8, 11.3, 14.4, 15.7, 14.0, 13.6, 18.0, 13.6, 19.9, 13.7, 17.0, 20.5, 9.9, 12.5, 13.2, 16.1, 13.5, 6.3, 6.4, 17.6, 19.1, 12.8, 15.5, 16.3, 15.2, 14.6, 19.1, 14.4, 21.4, 15.1, 19.6, 21.7, 11.3, 15.0, 14.3, 16.8, 14.0, 6.8, 8.2, 19.9, 20.4, 14.6, 16.4, 18.7, 16.8, 15.8, 20.4, 15.8, 22.4, 16.2, 20.3, 23.4, 12.1, 15.5, 15.4, 18.4, 15.7, 10.2, 8.9, 21.0" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.6.4" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +} diff --git a/module2/exo1/toy_notebook_fr.ipynb b/module2/exo1/toy_notebook_fr.ipynb deleted file mode 100644 index 0bbbe371b01e359e381e43239412d77bf53fb1fb..0000000000000000000000000000000000000000 --- a/module2/exo1/toy_notebook_fr.ipynb +++ /dev/null @@ -1,25 +0,0 @@ -{ - "cells": [], - "metadata": { - "kernelspec": { - "display_name": "Python 3", - "language": "python", - "name": "python3" - }, - "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 3 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython3", - "version": "3.6.3" - } - }, - "nbformat": 4, - "nbformat_minor": 2 -} - diff --git a/module2/exo2/exercice.ipynb b/module2/exo2/exercice.ipynb index 0bbbe371b01e359e381e43239412d77bf53fb1fb..cb1ca1c703473a1ce1bf069ce9f9024834c2b38f 100644 --- a/module2/exo2/exercice.ipynb +++ b/module2/exo2/exercice.ipynb @@ -1,5 +1,223 @@ { - "cells": [], + "cells": [ + { + "cell_type": "code", + "execution_count": 6, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "(14.0,\n", + " 7.6,\n", + " 11.2,\n", + " 12.8,\n", + " 12.5,\n", + " 9.9,\n", + " 14.9,\n", + " 9.4,\n", + " 16.9,\n", + " 10.2,\n", + " 14.9,\n", + " 18.1,\n", + " 7.3,\n", + " 9.8,\n", + " 10.9,\n", + " 12.2,\n", + " 9.9,\n", + " 2.9,\n", + " 2.8,\n", + " 15.4,\n", + " 15.7,\n", + " 9.7,\n", + " 13.1,\n", + " 13.2,\n", + " 12.3,\n", + " 11.7,\n", + " 16.0,\n", + " 12.4,\n", + " 17.9,\n", + " 12.2,\n", + " 16.2,\n", + " 18.7,\n", + " 8.9,\n", + " 11.9,\n", + " 12.1,\n", + " 14.6,\n", + " 12.1,\n", + " 4.7,\n", + " 3.9,\n", + " 16.9,\n", + " 16.8,\n", + " 11.3,\n", + " 14.4,\n", + " 15.7,\n", + " 14.0,\n", + " 13.6,\n", + " 18.0,\n", + " 13.6,\n", + " 19.9,\n", + " 13.7,\n", + " 17.0,\n", + " 20.5,\n", + " 9.9,\n", + " 12.5,\n", + " 13.2,\n", + " 16.1,\n", + " 13.5,\n", + " 6.3,\n", + " 6.4,\n", + " 17.6,\n", + " 19.1,\n", + " 12.8,\n", + " 15.5,\n", + " 16.3,\n", + " 15.2,\n", + " 14.6,\n", + " 19.1,\n", + " 14.4,\n", + " 21.4,\n", + " 15.1,\n", + " 19.6,\n", + " 21.7,\n", + " 11.3,\n", + " 15.0,\n", + " 14.3,\n", + " 16.8,\n", + " 14.0,\n", + " 6.8,\n", + " 8.2,\n", + " 19.9,\n", + " 20.4,\n", + " 14.6,\n", + " 16.4,\n", + " 18.7,\n", + " 16.8,\n", + " 15.8,\n", + " 20.4,\n", + " 15.8,\n", + " 22.4,\n", + " 16.2,\n", + " 20.3,\n", + " 23.4,\n", + " 12.1,\n", + " 15.5,\n", + " 15.4,\n", + " 18.4,\n", + " 15.7,\n", + " 10.2,\n", + " 8.9,\n", + " 21.0)" + ] + }, + "execution_count": 6, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "14.0, 7.6, 11.2, 12.8, 12.5, 9.9, 14.9, 9.4, 16.9, 10.2, 14.9, 18.1, 7.3, 9.8, 10.9,12.2, 9.9, 2.9, 2.8, 15.4, 15.7, 9.7, 13.1, 13.2, 12.3, 11.7, 16.0, 12.4, 17.9, 12.2, 16.2, 18.7, 8.9, 11.9, 12.1, 14.6, 12.1, 4.7, 3.9, 16.9, 16.8, 11.3, 14.4, 15.7, 14.0, 13.6, 18.0, 13.6, 19.9, 13.7, 17.0, 20.5, 9.9, 12.5, 13.2, 16.1, 13.5, 6.3, 6.4, 17.6, 19.1, 12.8, 15.5, 16.3, 15.2, 14.6, 19.1, 14.4, 21.4, 15.1, 19.6, 21.7, 11.3, 15.0, 14.3, 16.8, 14.0, 6.8, 8.2, 19.9, 20.4, 14.6, 16.4, 18.7, 16.8, 15.8, 20.4, 15.8, 22.4, 16.2, 20.3, 23.4, 12.1, 15.5, 15.4, 18.4, 15.7, 10.2, 8.9, 21.0" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + } + ], "metadata": { "kernelspec": { "display_name": "Python 3", @@ -16,10 +234,9 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.6.3" + "version": "3.6.4" } }, "nbformat": 4, "nbformat_minor": 2 } - diff --git a/module3/exo1/Exo GC.ipynb b/module3/exo1/Exo GC.ipynb new file mode 100644 index 0000000000000000000000000000000000000000..70ce697069073a7ad6feea7df671d708266a4823 --- /dev/null +++ b/module3/exo1/Exo GC.ipynb @@ -0,0 +1,561 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "# Sujet 6 : Autour du Paradoxe de Simpson" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "En 1972-1974, à Whickham, une ville du nord-est de l'Angleterre, située à environ 6,5 kilomètres au sud-ouest de Newcastle upon Tyne, un sondage d'un sixième des électeurs a été effectué afin d'éclairer des travaux sur les maladies thyroïdiennes et cardiaques (Tunbridge et al. 1977). Une suite de cette étude a été menée vingt ans plus tard (Vanderpump et al. 1995). Certains des résultats avaient trait au tabagisme et cherchaient à savoir si les individus étaient toujours en vie lors de la seconde étude. Par simplicité, nous nous restreindrons aux femmes et parmi celles-ci aux 1314 qui ont été catégorisées comme \"fumant actuellement\" ou \"n'ayant jamais fumé\". Il y avait relativement peu de femmes dans le sondage initial ayant fumé et ayant arrêté depuis (162) et très peu pour lesquelles l'information n'était pas disponible (18). La survie à 20 ans a été déterminée pour l'ensemble des femmes du premier sondage." + ] + }, + { + "cell_type": "code", + "execution_count": 1, + "metadata": {}, + "outputs": [], + "source": [ + "%matplotlib inline\n", + "import matplotlib.pyplot as plt\n", + "import pandas as pd\n", + "import isoweek" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Le fichier récupéré est en format CSV. Sur chaque ligne se trouve les informations suivantes: la personne fume ou non, elle est vivante au moment de la seconde étude, et son âge lors du premier sondage." + ] + }, + { + "cell_type": "code", + "execution_count": 5, + "metadata": {}, + "outputs": [], + "source": [ + "data_url = \"https://gitlab.inria.fr/learninglab/mooc-rr/mooc-rr-ressources/-/raw/master/module3/Practical_session/Subject6_smoking.csv?inline=false\"" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "La première ligne du fichier CSV est un commentaire, que nous ignorons en précisant skiprows=1." + ] + }, + { + "cell_type": "code", + "execution_count": 6, + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "
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SmokerStatusAge
0YesAlive21.0
1YesAlive19.3
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11NoDead66.0
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14NoDead60.6
15NoAlive25.1
16NoAlive43.5
17NoAlive27.1
18NoAlive58.3
19YesAlive65.7
20NoDead73.2
21YesAlive38.3
22NoAlive33.4
23YesDead62.3
24NoAlive18.0
25NoAlive56.2
26YesAlive59.2
27NoAlive25.8
28NoDead36.9
29NoAlive20.2
............
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1287NoAlive60.8
1288YesDead39.3
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1290NoAlive63.8
1291NoDead71.3
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1296YesAlive38.3
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1300NoDead71.0
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1309YesAlive35.9
1310NoAlive22.3
1311YesDead62.1
1312NoDead88.6
1313NoAlive39.1
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1314 rows × 3 columns

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" + ], + "text/plain": [ + " Smoker Status Age\n", + "0 Yes Alive 21.0\n", + "1 Yes Alive 19.3\n", + "2 No Dead 57.5\n", + "3 No Alive 47.1\n", + "4 Yes Alive 81.4\n", + "5 No Alive 36.8\n", + "6 No Alive 23.8\n", + "7 Yes Dead 57.5\n", + "8 Yes Alive 24.8\n", + "9 Yes Alive 49.5\n", + "10 Yes Alive 30.0\n", + "11 No Dead 66.0\n", + "12 Yes Alive 49.2\n", + "13 No Alive 58.4\n", + "14 No Dead 60.6\n", + "15 No Alive 25.1\n", + "16 No Alive 43.5\n", + "17 No Alive 27.1\n", + "18 No Alive 58.3\n", + "19 Yes Alive 65.7\n", + "20 No Dead 73.2\n", + "21 Yes Alive 38.3\n", + "22 No Alive 33.4\n", + "23 Yes Dead 62.3\n", + "24 No Alive 18.0\n", + "25 No Alive 56.2\n", + "26 Yes Alive 59.2\n", + "27 No Alive 25.8\n", + "28 No Dead 36.9\n", + "29 No Alive 20.2\n", + "... ... ... ...\n", + "1284 Yes Dead 36.0\n", + "1285 Yes Alive 48.3\n", + "1286 No Alive 63.1\n", + "1287 No Alive 60.8\n", + "1288 Yes Dead 39.3\n", + "1289 No Alive 36.7\n", + "1290 No Alive 63.8\n", + "1291 No Dead 71.3\n", + "1292 No Alive 57.7\n", + "1293 No Alive 63.2\n", + "1294 No Alive 46.6\n", + "1295 Yes Dead 82.4\n", + "1296 Yes Alive 38.3\n", + "1297 Yes Alive 32.7\n", + "1298 No Alive 39.7\n", + "1299 Yes Dead 60.0\n", + "1300 No Dead 71.0\n", + "1301 No Alive 20.5\n", + "1302 No Alive 44.4\n", + "1303 Yes Alive 31.2\n", + "1304 Yes Alive 47.8\n", + "1305 Yes Alive 60.9\n", + "1306 No Dead 61.4\n", + "1307 Yes Alive 43.0\n", + "1308 No Alive 42.1\n", + "1309 Yes Alive 35.9\n", + "1310 No Alive 22.3\n", + "1311 Yes Dead 62.1\n", + "1312 No Dead 88.6\n", + "1313 No Alive 39.1\n", + "\n", + "[1314 rows x 3 columns]" + ] + }, + "execution_count": 6, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "raw_data = pd.read_csv(data_url, skiprows=0)\n", + "raw_data" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.6.4" + } + }, + "nbformat": 4, + "nbformat_minor": 4 +} diff --git a/module3/exo1/Untitled.ipynb b/module3/exo1/Untitled.ipynb new file mode 100644 index 0000000000000000000000000000000000000000..7fec51502cbc3200b3d0ffc6bbba1fe85e197f3d --- /dev/null +++ b/module3/exo1/Untitled.ipynb @@ -0,0 +1,6 @@ +{ + "cells": [], + "metadata": {}, + "nbformat": 4, + "nbformat_minor": 4 +}