diff --git a/module2/slides/Makefile b/module2/slides/Makefile deleted file mode 120000 index cebfb908ddda00cb567e6be38a30f1eb8770f8ee..0000000000000000000000000000000000000000 --- a/module2/slides/Makefile +++ /dev/null @@ -1 +0,0 @@ -../../bin/Makefile \ No newline at end of file diff --git a/module2/slides/Makefile b/module2/slides/Makefile new file mode 100644 index 0000000000000000000000000000000000000000..5b13068d64e137f7269f728f6274fa16ddae86af --- /dev/null +++ b/module2/slides/Makefile @@ -0,0 +1,16 @@ +C028AL_slides_module2-en-gz.pdf: slides_module2.pdf + mv $< $@ + +C028AL_slides_module2-fr-gz.pdf: diapos_module2.pdf + mv $< $@ + +%-gz.pdf: %.pdf + gzprez $< + +%.pdf: %.tex + pdflatex --shell-escape $^ + pdflatex --shell-escape $^ + +%.tex: %.org + emacs -batch --eval "(setq enable-local-eval t)" --eval "(setq enable-local-variables t)" $^ --funcall org-beamer-export-to-latex + # sed -i -e 's|includegraphics\(.*\)../assets/img/|includegraphics\1../assets/img/thumbnail/|' -e 's/\.png}/.jpg}/i' $@ diff --git a/module2/slides/diapos_module2.org b/module2/slides/diapos_module2.org index a39f0cc926cee1b1edfecf951d51557b9dc964df..ab224c4c6f601ff379fe6bb47f7cf392120149de 100644 --- a/module2/slides/diapos_module2.org +++ b/module2/slides/diapos_module2.org @@ -37,33 +37,26 @@ #+LaTeX: \begin{frame}{Plan du cours}\tableofcontents\end{frame} * Test et informations :noexport: ** Images - # - file:assets/img/donald_trump.jpg :: [[https://upload.wikimedia.org/wikipedia/commons/d/d4/Donald_Trump_%252825653047910%2529.jpg][Wikimedia]] - # - file:assets/img/trump_vs_obama_inauguration.png :: Screenshot from the - # [[https://www.nytimes.com/interactive/2017/01/20/us/politics/trump-inauguration-crowd.html][NY Times]] - # - file:assets/img/in_science_we_trust.jpg :: crop from [[http://drrichswier.com/2014/04/23/atheism-evolution-and-secular-humanism-masquerading-as-science-against-the-bible-and-creation/][the blog of a - # conservative]]. - # - file:assets/img/les_decodeurs.png :: Montage à partir du site - # http://www.lemonde.fr/les-decodeurs/ le 30 juillet. Origin of every image used in this series of slides: - PhD Comics: - - [[file:../assets/img/phd010708.png][phd010708.png]]: http://phdcomics.com/comics/archive.php?comicid=961 + - [[file:img/phd010708.png][phd010708.png]]: http://phdcomics.com/comics/archive.php?comicid=961 c'est du fan art, là ;) je cite phdcomics dans la vidéo donc je pense qu'on est bon et je doute qu'il vienne nous embêter vu le sujet. -- [[file:../assets/img/in_science_we_trust.jpg][in_science_we_trust.jpg]]: https://www.google.fr/search?client=firefox-b&dcr=0&biw=1450&bih=783&tbm=isch&sa=1&q=in+science+we+trust&oq=in+science+we+trust&gs_l=psy-ab.3..0i13k1j0i30k1l3.2692.5748.0.5946.6.5.0.0.0.0.694.1147.0j3j5-1.4.0....0...1.1.64.psy-ab..2.4.1144...0i7i30k1.0.JVlXKVLc9a4#imgrc=bt5vbb5C4e9fHM +- [[file:img/in_science_we_trust.jpg][in_science_we_trust.jpg]]: https://www.google.fr/search?client=firefox-b&dcr=0&biw=1450&bih=783&tbm=isch&sa=1&q=in+science+we+trust&oq=in+science+we+trust&gs_l=psy-ab.3..0i13k1j0i30k1l3.2692.5748.0.5946.6.5.0.0.0.0.694.1147.0j3j5-1.4.0....0...1.1.64.psy-ab..2.4.1144...0i7i30k1.0.JVlXKVLc9a4#imgrc=bt5vbb5C4e9fHM puis http://www.patheos.com/blogs/unreasonablefaith/2012/03/a-better-motto/in-science-we-trust-coin/ normalement -- [[file:../assets/img/Researcher-test.jpg][Researcher-test.jpg]]: https://fr.wikipedia.org/wiki/Imagerie_par_r%C3%A9sonance_magn%C3%A9tique_fonctionnelle#/media/File:Researcher-test.jpg -- [[file:../assets/img/flipping_fiasco.png][flipping_fiasco.png]]: https://people.ligo-wa.caltech.edu/~michael.landry/calibration/S5/getsignright.pdf -- [[file:../assets/img/in_science_we_trust_small.jpg][in_science_we_trust_small.jpg]]: voir file:../assets/img/in_science_we_trust.jpg +- [[file:img/Researcher-test.jpg][Researcher-test.jpg]]: https://fr.wikipedia.org/wiki/Imagerie_par_r%C3%A9sonance_magn%C3%A9tique_fonctionnelle#/media/File:Researcher-test.jpg +- [[file:img/flipping_fiasco.png][flipping_fiasco.png]]: https://people.ligo-wa.caltech.edu/~michael.landry/calibration/S5/getsignright.pdf +- [[file:img/in_science_we_trust_small.jpg][in_science_we_trust_small.jpg]]: voir file:img/in_science_we_trust.jpg - - [[file:../assets/img/box-she-s-told-not-to-open-in-it-the-gods-had-placed-all-the-evils-9vbl9q-clipart.jpg][box-she-s-told-not-to-open-in-it-the-gods-had-placed-all-the-evils-9vbl9q-clipart.jpg]]: + [[file:img/box-she-s-told-not-to-open-in-it-the-gods-had-placed-all-the-evils-9vbl9q-clipart.jpg][box-she-s-told-not-to-open-in-it-the-gods-had-placed-all-the-evils-9vbl9q-clipart.jpg]]: trouvé à la base sur https://politicsinpinkdotcom.files.wordpress.com/2016/12/box-she-s-told-not-to-open-in-it-the-gods-had-placed-all-the-evils-9vbl9q-clipart.jpg mais visiblement achetable ici: http://www.istockphoto.com/fr/vectoriel/femme-laissant-d%C3%A9mons-de-la-poitrine-gm165517954-24325536 *à acheter*. -- [[file:../assets/img/in_code_we_trust.jpg][in_code_we_trust.jpg]]: https://www.google.fr/url?sa=i&rct=j&q=&esrc=s&source=images&cd=&cad=rja&uact=8&ved=0ahUKEwiJ2ZfIi4fXAhUJVxQKHb-xCBoQjRwIBw&url=https%3A%2F%2Fwww.spreadshirt.com%2Fa%2Bprogrammer%2Blife-A14770086&psig=AOvVaw1ZDWatztzt2-ycU-7qy-Gh&ust=1508859944930121 -- [[file:../assets/img/iceberg.jpg][iceberg.jpg]]: http://www.jdubuzz.com/files/2016/03/iceberg-principle.jpg -- [[file:../assets/img/iceberg_publication-1.png][iceberg_publication-1.png]] and others alike: +- [[file:img/in_code_we_trust.jpg][in_code_we_trust.jpg]]: https://www.google.fr/url?sa=i&rct=j&q=&esrc=s&source=images&cd=&cad=rja&uact=8&ved=0ahUKEwiJ2ZfIi4fXAhUJVxQKHb-xCBoQjRwIBw&url=https%3A%2F%2Fwww.spreadshirt.com%2Fa%2Bprogrammer%2Blife-A14770086&psig=AOvVaw1ZDWatztzt2-ycU-7qy-Gh&ust=1508859944930121 +- [[file:img/iceberg.jpg][iceberg.jpg]]: http://www.jdubuzz.com/files/2016/03/iceberg-principle.jpg +- [[file:img/iceberg_publication-1.png][iceberg_publication-1.png]] and others alike: - Crédits Juliana Freire: slides 2 à 5 de http://catt.nyu.edu/sites/default/files/files/Provenance_In_Data_Exploration.pdf - https://en.wikipedia.org/wiki/Large_Hadron_Collider#/media/File:CERN_LHC.jpg - https://fr.wikipedia.org/wiki/T%C3%A9lescope#/media/File:Hubble_01.jpg @@ -73,8 +66,8 @@ Origin of every image used in this series of slides: - https://fr.wikipedia.org/wiki/Treemap#/media/File:Carte-proportionnelle-france.png - https://fr.wikipedia.org/wiki/Repr%C3%A9sentation_graphique_de_donn%C3%A9es_statistiques - https://fr.wikipedia.org/wiki/Visualisation_d%27informations#/media/File:InteractionAandB.png -- [[file:../assets/img/RStudio-Logo-Blue-Gradient.png and file:../assets/img//knitr.png][RStudio-Logo-Blue-Gradient.png and file:../assets/img//knitr.png]]: https://www.rstudio.com/about/logos/ -- [[file:../assets/img/jumping_penguin.png][jumping_penguin.png]]: http://www.istockphoto.com/be/photo/saut-penguins-de-papou-sur-iceberg-gm466554153-33737494 +- [[file:img/RStudio-Logo-Blue-Gradient.png and file:img//knitr.png][RStudio-Logo-Blue-Gradient.png and file:img//knitr.png]]: https://www.rstudio.com/about/logos/ +- [[file:img/jumping_penguin.png][jumping_penguin.png]]: http://www.istockphoto.com/be/photo/saut-penguins-de-papou-sur-iceberg-gm466554153-33737494 *à acheter*. * Internal refs/notes :noexport: ** phdcomics @@ -150,7 +143,7 @@ ipython3 nbconvert --to pdf Untitled.ipynb \vspace{-1cm} \begin{flushright} - \includegraphics[width=7cm]{../assets/img/phd010708.png} + \includegraphics[width=7cm]{img/phd010708.png} \end{flushright} \vspace{-1cm} @@ -252,7 +245,7 @@ ipython3 nbconvert --to pdf Untitled.ipynb 6. Analyse comparée des différents outils ** Exemples récents d'études assez discutées -file:../assets/img/in_science_we_trust.jpg +file:img/in_science_we_trust.jpg # Note: # Je vous avais promis quelques exemples récents de travaux dont les @@ -370,7 +363,7 @@ file:../assets/img/in_science_we_trust.jpg Des méthodes statistiques à améliorer mais pas de remise en cause fondamentale. -file:../assets/img/Researcher-test.jpg +file:img/Researcher-test.jpg # Note: @@ -424,7 +417,7 @@ des bactéries résistant aux antibiotiques. (Mol. Biology, 2003), Salmonella typhimurium (Science, 2005) #+LaTeX: \end{column}\begin{column}{3.5cm} -#+LaTeX: \hspace{-.3\linewidth}\includegraphics[width=1.2\linewidth]{../assets/img/flipping_fiasco.png} +#+LaTeX: \hspace{-.3\linewidth}\includegraphics[width=1.2\linewidth]{img/flipping_fiasco.png} #+LaTeX: \end{column}\end{columns}\medskip *2006* : Incohérences, alertes, puis 5 rétractations @@ -478,7 +471,7 @@ team had derived the protein structure. - [[http://theconversation.com/we-found-only-one-third-of-published-psychology-research-is-reliable-now-what-46596][Psychologie]] : "réplication d'une centaine d'articles /seulement un tiers de résultats cohérents/" #+LaTeX: \end{column}\begin{column}{3.5cm} -#+LaTeX: \hspace{-.1\linewidth}\includegraphics[width=1\linewidth]{../assets/img/in_science_we_trust_small.jpg} +#+LaTeX: \hspace{-.1\linewidth}\includegraphics[width=1\linewidth]{img/in_science_we_trust_small.jpg} #+LaTeX: \end{column}\end{columns}\medskip #+BEGIN_CENTER @@ -529,7 +522,7 @@ team had derived the protein structure. 5. Travailler avec les autres 6. Analyse comparée des différents outils ** Pourquoi est-ce difficile ? -file:../assets/img/box-she-s-told-not-to-open-in-it-the-gods-had-placed-all-the-evils-9vbl9q-clipart.jpg +file:img/box-she-s-told-not-to-open-in-it-the-gods-had-placed-all-the-evils-9vbl9q-clipart.jpg # Note: Comme nous l'avons vu, reproduire les travaux de recherche, même # publiés dans des revues prestigieuses est souvent assez # difficile. Dans cette séquence, nous allons identifier les difficultés @@ -895,8 +888,8 @@ Donnons nous les moyens que tout soit inspectable à la demande 2. Erreurs de calcul 3. Manque de rigueur scientifique et technique -#+LaTeX: \begin{center}\includegraphics[height=2.5cm]{../assets/img/in_science_we_trust_small.jpg} -#+LaTeX: \includegraphics[height=2.5cm]{../assets/img/in_code_we_trust.jpg}\end{center} +#+LaTeX: \begin{center}\includegraphics[height=2.5cm]{img/in_science_we_trust_small.jpg} +#+LaTeX: \includegraphics[height=2.5cm]{img/in_code_we_trust.jpg}\end{center} *** Expliciter augmente les chances de trouver les erreurs et de les éliminer @@ -940,7 +933,7 @@ Donnons nous les moyens que tout soit inspectable à la demande 5. Travailler avec les autres 6. Analyse comparée des différents outils ** Le document computationnel : principe -file:../assets/img/iceberg.jpg +file:img/iceberg.jpg # Note: @@ -953,11 +946,11 @@ file:../assets/img/iceberg.jpg ** La science moderne -#+LaTeX: \includegraphics<1>[width=\linewidth]{../assets/img/iceberg_publication-1.png}% -#+LaTeX: \includegraphics<2>[width=\linewidth]{../assets/img/iceberg_publication-2.png}% -#+LaTeX: \includegraphics<3>[width=\linewidth]{../assets/img/iceberg_publication-3.png}% -#+LaTeX: \includegraphics<4>[width=\linewidth]{../assets/img/iceberg_publication-4.png}% -#+LaTeX: \includegraphics<5>[width=\linewidth]{../assets/img/iceberg_publication-5.png}% +#+LaTeX: \includegraphics<1>[width=\linewidth]{img/iceberg_publication-1.png}% +#+LaTeX: \includegraphics<2>[width=\linewidth]{img/iceberg_publication-2.png}% +#+LaTeX: \includegraphics<3>[width=\linewidth]{img/iceberg_publication-3.png}% +#+LaTeX: \includegraphics<4>[width=\linewidth]{img/iceberg_publication-4.png}% +#+LaTeX: \includegraphics<5>[width=\linewidth]{img/iceberg_publication-5.png}% # Note: @@ -1023,18 +1016,18 @@ Garder trace afin de : # la procédure d'analyse dans un autre contexte. ** La vitrine... et l'envers du décor \scriptsize -#+LaTeX: \only<1>{\hfill\includesvg[width=.5\linewidth]{../assets/img/example_pi_full-1}}% -#+LaTeX: \only<2>{\includesvg[width=\linewidth]{../assets/img/example_pi_full-2}}% -#+LaTeX: \only<3>{\includesvg[width=\linewidth]{../assets/img/example_pi_full-3}}% -#+LaTeX: \only<4>{\includesvg[width=\linewidth]{../assets/img/example_pi_full-4}}% -#+LaTeX: \only<5>{\includesvg[width=\linewidth]{../assets/img/example_pi_full-5}}% -#+LaTeX: \only<6>{\includesvg[width=\linewidth]{../assets/img/example_pi_full-6}}% - -# #+LaTeX: \includesvg<1>[width=\linewidth]{../assets/img/example_pi_full-2.svg}% -# #+LaTeX: \includesvg<1>[width=\linewidth]{../assets/img/example_pi_full-3.svg}% -# #+LaTeX: \includesvg<1>[width=\linewidth]{../assets/img/example_pi_full-4.svg}% -# #+LaTeX: \includesvg<1>[width=\linewidth]{../assets/img/example_pi_full-5.svg}% -# #+LaTeX: \includesvg<1>[width=\linewidth]{../assets/img/example_pi_full-6.svg}% +#+LaTeX: \only<1>{\hfill\includesvg[width=.5\linewidth]{img/example_pi_full-1}}% +#+LaTeX: \only<2>{\includesvg[width=\linewidth]{img/example_pi_full-2}}% +#+LaTeX: \only<3>{\includesvg[width=\linewidth]{img/example_pi_full-3}}% +#+LaTeX: \only<4>{\includesvg[width=\linewidth]{img/example_pi_full-4}}% +#+LaTeX: \only<5>{\includesvg[width=\linewidth]{img/example_pi_full-5}}% +#+LaTeX: \only<6>{\includesvg[width=\linewidth]{img/example_pi_full-6}}% + +# #+LaTeX: \includesvg<1>[width=\linewidth]{img/example_pi_full-2.svg}% +# #+LaTeX: \includesvg<1>[width=\linewidth]{img/example_pi_full-3.svg}% +# #+LaTeX: \includesvg<1>[width=\linewidth]{img/example_pi_full-4.svg}% +# #+LaTeX: \includesvg<1>[width=\linewidth]{img/example_pi_full-5.svg}% +# #+LaTeX: \includesvg<1>[width=\linewidth]{img/example_pi_full-6.svg}% # Note: @@ -1180,7 +1173,7 @@ Garder trace afin de : 6. Analyse comparée des différents outils ** Prise en main de l'outil : Jupyter #+ATTR_LATEX: :height 2cm :center nil -file:../assets/img/jupyter-logo.png +file:img/jupyter-logo.png ** Lancement - Ouverture d'un document - Description rapide @@ -1235,9 +1228,9 @@ file:../assets/img/jupyter-logo.png ** Prise en main de l'outil : Rstudio #+ATTR_LATEX: :height 2cm :center nil -file:../assets/img/RStudio-Logo-Blue-Gradient.png +file:img/RStudio-Logo-Blue-Gradient.png #+ATTR_LATEX: :height 2cm :center nil -file:../assets/img//knitr.png +file:img//knitr.png ** Lancement - Ouverture d'un document @@ -1285,9 +1278,9 @@ Possibilité de faire du LaTeX (R Sweave : =Rnw=) ou du html (R html : 6. Analyse comparée des différents outils ** Prise en main de l'outil : Org Mode #+ATTR_LATEX: :height 2cm :center nil -file:../assets/img/600px-EmacsIcon.svg.png +file:img/600px-EmacsIcon.svg.png #+ATTR_LATEX: :height 2cm :center nil -file:../assets/img/442px-Org-mode-unicorn.svg.png +file:img/442px-Org-mode-unicorn.svg.png # Note: # Même plan que précédemment @@ -1346,7 +1339,7 @@ file:../assets/img/442px-Org-mode-unicorn.svg.png 5. *Travailler avec les autres* 6. Analyse comparée des différents outils ** Travailler avec les autres -file:../assets/img/jumping_penguin.png +file:img/jumping_penguin.png ** Préparer un document pour un journal Pré-requis pour faire un *pdf* : - Actuellement caché. 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and b/module2/slides/img/knitr.png differ diff --git a/module2/slides/img/phd010708.png b/module2/slides/img/phd010708.png new file mode 100644 index 0000000000000000000000000000000000000000..a3e77a23ff20f20ff2f72644b8df176a68619582 Binary files /dev/null and b/module2/slides/img/phd010708.png differ diff --git a/module2/slides/img/question_mark.png b/module2/slides/img/question_mark.png new file mode 100644 index 0000000000000000000000000000000000000000..be9c9c79e55d8bb90fe23216eb07f5574eacf662 Binary files /dev/null and b/module2/slides/img/question_mark.png differ diff --git a/module2/slides/slides_module2.org b/module2/slides/slides_module2.org index b7fef01b669b68605412871b285b4bc9b6ee1f45..4a41208966b9506458f049ff8e61596d77fba043 100644 --- a/module2/slides/slides_module2.org +++ b/module2/slides/slides_module2.org @@ -40,7 +40,7 @@ \vspace{-1cm} \begin{flushright} - \includegraphics[width=7cm]{../assets/img/phd010708.png} + \includegraphics[width=7cm]{img/phd010708.png} \end{flushright} \vspace{-1cm} @@ -142,7 +142,7 @@ 6. Comparative study ** A Few Recent Controversial Studies -file:../assets/img/in_science_we_trust.jpg +file:img/in_science_we_trust.jpg # Note: # Je vous avais promis quelques exemples récents de travaux dont les @@ -255,7 +255,7 @@ file:../assets/img/in_science_we_trust.jpg Statistical methods and methodology should be improved but no fundamental invalidation -file:../assets/img/Researcher-test.jpg +file:img/Researcher-test.jpg # Note: @@ -309,7 +309,7 @@ multidrug resistant bacteria (Mol. Biology, 2003), Salmonella typhimurium (Science, 2005) #+LaTeX: \end{column}\begin{column}{3.5cm} -#+LaTeX: \hspace{-.3\linewidth}\includegraphics[width=1.2\linewidth]{../assets/img/flipping_fiasco.png} +#+LaTeX: \hspace{-.3\linewidth}\includegraphics[width=1.2\linewidth]{img/flipping_fiasco.png} #+LaTeX: \end{column}\end{columns}\medskip *2006*: Inconsistencies, alerts, then 5 retractions @@ -363,7 +363,7 @@ team had derived the protein structure. findings/, /only one-third of published psychology research was found to be reliable/" #+LaTeX: \end{column}\begin{column}{3.5cm} -#+LaTeX: \hspace{-.1\linewidth}\includegraphics[width=1\linewidth]{../assets/img/in_science_we_trust_small.jpg} +#+LaTeX: \hspace{-.1\linewidth}\includegraphics[width=1\linewidth]{img/in_science_we_trust_small.jpg} #+LaTeX: \end{column}\end{columns}\medskip #+BEGIN_CENTER @@ -413,7 +413,7 @@ team had derived the protein structure. 5. Collaborating 6. Comparative study ** Why is This so Difficult? -file:../assets/img/box-she-s-told-not-to-open-in-it-the-gods-had-placed-all-the-evils-9vbl9q-clipart.jpg +file:img/box-she-s-told-not-to-open-in-it-the-gods-had-placed-all-the-evils-9vbl9q-clipart.jpg # Note: Comme nous l'avons vu, reproduire les travaux de recherche, même # publiés dans des revues prestigieuses est souvent assez # difficile. Dans cette séquence, nous allons identifier les difficultés @@ -777,8 +777,8 @@ demand. 2. Computation mistakes 3. Lack of scientific and technical rigor -#+LaTeX: \begin{center}\includegraphics[height=2.5cm]{../assets/img/in_science_we_trust_small.jpg} -#+LaTeX: \includegraphics[height=2.5cm]{../assets/img/in_code_we_trust.jpg}\end{center} +#+LaTeX: \begin{center}\includegraphics[height=2.5cm]{img/in_science_we_trust_small.jpg} +#+LaTeX: \includegraphics[height=2.5cm]{img/in_code_we_trust.jpg}\end{center} *** Making everything explicit increases the chances of finding and getting rid of mistakes @@ -822,7 +822,7 @@ demand. 5. Collaborating 6. Comparative study ** Computational Documents: Principles -file:../assets/img/iceberg.jpg +file:img/iceberg.jpg # Note: @@ -835,11 +835,11 @@ file:../assets/img/iceberg.jpg ** Modern Science -#+LaTeX: \includegraphics<1>[width=\linewidth]{../assets/img/iceberg_publication-1.png}% -#+LaTeX: \includegraphics<2>[width=\linewidth]{../assets/img/iceberg_publication-2.png}% -#+LaTeX: \includegraphics<3>[width=\linewidth]{../assets/img/iceberg_publication-3.png}% -#+LaTeX: \includegraphics<4>[width=\linewidth]{../assets/img/iceberg_publication-4.png}% -#+LaTeX: \includegraphics<5>[width=\linewidth]{../assets/img/iceberg_publication-5.png}% +#+LaTeX: \includegraphics<1>[width=\linewidth]{img/iceberg_publication-1.png}% +#+LaTeX: \includegraphics<2>[width=\linewidth]{img/iceberg_publication-2.png}% +#+LaTeX: \includegraphics<3>[width=\linewidth]{img/iceberg_publication-3.png}% +#+LaTeX: \includegraphics<4>[width=\linewidth]{img/iceberg_publication-4.png}% +#+LaTeX: \includegraphics<5>[width=\linewidth]{img/iceberg_publication-5.png}% # Note: @@ -905,18 +905,18 @@ Keep track to allow: # la procédure d'analyse dans un autre contexte. ** Behind the Scenes \scriptsize -#+LaTeX: \only<1>{\hfill\includesvg[width=.5\linewidth]{../assets/img/example_pi_full-1}}% -#+LaTeX: \only<2>{\includesvg[width=\linewidth]{../assets/img/example_pi_full-2}}% -#+LaTeX: \only<3>{\includesvg[width=\linewidth]{../assets/img/example_pi_full-3}}% -#+LaTeX: \only<4>{\includesvg[width=\linewidth]{../assets/img/example_pi_full-4}}% -#+LaTeX: \only<5>{\includesvg[width=\linewidth]{../assets/img/example_pi_full-5}}% -#+LaTeX: \only<6>{\includesvg[width=\linewidth]{../assets/img/example_pi_full-6}}% - -# #+LaTeX: \includesvg<1>[width=\linewidth]{../assets/img/example_pi_full-2.svg}% -# #+LaTeX: \includesvg<1>[width=\linewidth]{../assets/img/example_pi_full-3.svg}% -# #+LaTeX: \includesvg<1>[width=\linewidth]{../assets/img/example_pi_full-4.svg}% -# #+LaTeX: \includesvg<1>[width=\linewidth]{../assets/img/example_pi_full-5.svg}% -# #+LaTeX: \includesvg<1>[width=\linewidth]{../assets/img/example_pi_full-6.svg}% +#+LaTeX: \only<1>{\hfill\includesvg[width=.5\linewidth]{img/example_pi_full-1}}% +#+LaTeX: \only<2>{\includesvg[width=\linewidth]{img/example_pi_full-2}}% +#+LaTeX: \only<3>{\includesvg[width=\linewidth]{img/example_pi_full-3}}% +#+LaTeX: \only<4>{\includesvg[width=\linewidth]{img/example_pi_full-4}}% +#+LaTeX: \only<5>{\includesvg[width=\linewidth]{img/example_pi_full-5}}% +#+LaTeX: \only<6>{\includesvg[width=\linewidth]{img/example_pi_full-6}}% + +# #+LaTeX: \includesvg<1>[width=\linewidth]{img/example_pi_full-2.svg}% +# #+LaTeX: \includesvg<1>[width=\linewidth]{img/example_pi_full-3.svg}% +# #+LaTeX: \includesvg<1>[width=\linewidth]{img/example_pi_full-4.svg}% +# #+LaTeX: \includesvg<1>[width=\linewidth]{img/example_pi_full-5.svg}% +# #+LaTeX: \includesvg<1>[width=\linewidth]{img/example_pi_full-6.svg}% # Note: @@ -1062,7 +1062,7 @@ Keep track to allow: 6. Comparative study ** Hands On: Jupyter #+ATTR_LATEX: :height 2cm :center nil -file:../assets/img/jupyter-logo.png +file:img/jupyter-logo.png ** Startup - Opening a document - Quick Tour @@ -1116,9 +1116,9 @@ file:../assets/img/jupyter-logo.png ** Hands On: Rstudio #+ATTR_LATEX: :height 2cm :center nil -file:../assets/img/RStudio-Logo-Blue-Gradient.png +file:img/RStudio-Logo-Blue-Gradient.png #+ATTR_LATEX: :height 2cm :center nil -file:../assets/img//knitr.png +file:img//knitr.png ** Startup - Opening a document @@ -1169,9 +1169,9 @@ Writing raw LaTeX (R Sweave: =Rnw=) or HTML (R HTML: 6. Comparative study ** Hands On: Org Mode #+ATTR_LATEX: :height 2cm :center nil -file:../assets/img/600px-EmacsIcon.svg.png +file:img/600px-EmacsIcon.svg.png #+ATTR_LATEX: :height 2cm :center nil -file:../assets/img/442px-Org-mode-unicorn.svg.png +file:img/442px-Org-mode-unicorn.svg.png # Note: # Même plan que précédemment @@ -1228,7 +1228,7 @@ file:../assets/img/442px-Org-mode-unicorn.svg.png 5. *Collaborating* 6. Comparative study ** Collaborating -file:../assets/img/jumping_penguin.png +file:img/jumping_penguin.png ** Preparing a Document for a Journal or a Conference Requirements for producing a *pdf*: - Internally, /pandoc/, /knitr/ or /emacs/org-mode/ @@ -1327,13 +1327,13 @@ Several options depending on: ** Comparative Study #+ATTR_LATEX: :height 2cm :center nil -file:../assets/img/jupyter-logo.png +file:img/jupyter-logo.png #+ATTR_LATEX: :height 2cm :center nil -file:../assets/img/RStudio-Logo-Blue-Gradient.png +file:img/RStudio-Logo-Blue-Gradient.png #+ATTR_LATEX: :height 2cm :center nil -file:../assets/img/442px-Org-mode-unicorn.svg.png +file:img/442px-Org-mode-unicorn.svg.png #+ATTR_LATEX: :height 2cm :center nil -file:../assets/img/question_mark.png +file:img/question_mark.png \bigskip