diff --git a/module2/exo1/cars.png b/module2/exo1/cars.png deleted file mode 100644 index c6d11231a623dd84dd346684b7ad070020623436..0000000000000000000000000000000000000000 Binary files a/module2/exo1/cars.png and /dev/null differ diff --git a/module2/exo1/cosxsx.png b/module2/exo1/cosxsx.png deleted file mode 100644 index d3eba014e6489d417bfbd59f47373a5d683b833c..0000000000000000000000000000000000000000 Binary files a/module2/exo1/cosxsx.png and /dev/null differ diff --git a/module2/exo2/exercice_python_en.org b/module2/exo2/exercice_python_en.org index 5782f493934678ba782fb65634a4d86e5f3adefc..da897ae1dc2af6016c0ae5067ef3d34e37bf756b 100644 --- a/module2/exo2/exercice_python_en.org +++ b/module2/exo2/exercice_python_en.org @@ -1,8 +1,8 @@ -#+TITLE: Your title -#+AUTHOR: Your name -#+DATE: Today's date +#+TITLE: Doing a simple calculation on your own +#+AUTHOR: Victor Martins Gomes +#+DATE: 2020-04-28 tuesday #+LANGUAGE: en -# #+PROPERTY: header-args :eval never-export +# #+PROPERTY: header-args :session :exports both #+HTML_HEAD: #+HTML_HEAD: @@ -11,84 +11,52 @@ #+HTML_HEAD: #+HTML_HEAD: -* Some explanations +* Computing statistics of series: +The mean, standard variation, median, maximum and minimum of the following series are going to be computed. -This is an org-mode document with code examples in R. Once opened in -Emacs, this document can easily be exported to HTML, PDF, and Office -formats. For more information on org-mode, see -https://orgmode.org/guide/. - -When you type the shortcut =C-c C-e h o=, this document will be -exported as HTML. All the code in it will be re-executed, and the -results will be retrieved and included into the exported document. If -you do not want to re-execute all code each time, you can delete the # -and the space before ~#+PROPERTY:~ in the header of this document. - -Like we showed in the video, Python code is included as follows (and -is exxecuted by typing ~C-c C-c~): - -#+begin_src python :results output :exports both -print("Hello world!") +** First we input the series. +#+begin_src python :results output :session *python* :exports both +import numpy as np +x=[14.0, 7.6, 11.2, 12.8, 12.5, 9.9, 14.9, 9.4, 16.9, 10.2, 14.9, 18.1, 7.3, 9.8, 10.9,12.2, 9.9, 2.9, 2.8, 15.4, 15.7, 9.7, 13.1, 13.2, 12.3, 11.7, 16.0, 12.4, 17.9, 12.2, 16.2, 18.7, 8.9, 11.9, 12.1, 14.6, 12.1, 4.7, 3.9, 16.9, 16.8, 11.3, 14.4, 15.7, 14.0, 13.6, 18.0, 13.6, 19.9, 13.7, 17.0, 20.5, 9.9, 12.5, 13.2, 16.1, 13.5, 6.3, 6.4, 17.6, 19.1, 12.8, 15.5, 16.3, 15.2, 14.6, 19.1, 14.4, 21.4, 15.1, 19.6, 21.7, 11.3, 15.0, 14.3, 16.8, 14.0, 6.8, 8.2, 19.9, 20.4, 14.6, 16.4, 18.7, 16.8, 15.8, 20.4, 15.8, 22.4, 16.2, 20.3, 23.4, 12.1, 15.5, 15.4, 18.4, 15.7, 10.2, 8.9, 21.0] +print(x) #+end_src #+RESULTS: -: Hello world! - -And now the same but in an Python session. With a session, Python's -state, i.e. the values of all the variables, remains persistent from -one code block to the next. The code is still executed using ~C-c -C-c~. +: [14.0, 7.6, 11.2, 12.8, 12.5, 9.9, 14.9, 9.4, 16.9, 10.2, 14.9, 18.1, 7.3, 9.8, 10.9, 12.2, 9.9, 2.9, 2.8, 15.4, 15.7, 9.7, 13.1, 13.2, 12.3, 11.7, 16.0, 12.4, 17.9, 12.2, 16.2, 18.7, 8.9, 11.9, 12.1, 14.6, 12.1, 4.7, 3.9, 16.9, 16.8, 11.3, 14.4, 15.7, 14.0, 13.6, 18.0, 13.6, 19.9, 13.7, 17.0, 20.5, 9.9, 12.5, 13.2, 16.1, 13.5, 6.3, 6.4, 17.6, 19.1, 12.8, 15.5, 16.3, 15.2, 14.6, 19.1, 14.4, 21.4, 15.1, 19.6, 21.7, 11.3, 15.0, 14.3, 16.8, 14.0, 6.8, 8.2, 19.9, 20.4, 14.6, 16.4, 18.7, 16.8, 15.8, 20.4, 15.8, 22.4, 16.2, 20.3, 23.4, 12.1, 15.5, 15.4, 18.4, 15.7, 10.2, 8.9, 21.0] -#+begin_src python :results output :session :exports both -import numpy -x=numpy.linspace(-15,15) -print(x) +** Computing the mean +#+begin_src python :results output :session *python* :exports both +avg_x = np.mean(x) +print(avg_x) #+end_src #+RESULTS: -#+begin_example -[-15. -14.3877551 -13.7755102 -13.16326531 -12.55102041 - -11.93877551 -11.32653061 -10.71428571 -10.10204082 -9.48979592 - -8.87755102 -8.26530612 -7.65306122 -7.04081633 -6.42857143 - -5.81632653 -5.20408163 -4.59183673 -3.97959184 -3.36734694 - -2.75510204 -2.14285714 -1.53061224 -0.91836735 -0.30612245 - 0.30612245 0.91836735 1.53061224 2.14285714 2.75510204 - 3.36734694 3.97959184 4.59183673 5.20408163 5.81632653 - 6.42857143 7.04081633 7.65306122 8.26530612 8.87755102 - 9.48979592 10.10204082 10.71428571 11.32653061 11.93877551 - 12.55102041 13.16326531 13.7755102 14.3877551 15. ] -#+end_example +: 14.113000000000001 -Finally, an example for graphical output: -#+begin_src python :results output file :session :var matplot_lib_filename="./cosxsx.png" :exports results -import matplotlib.pyplot as plt - -plt.figure(figsize=(10,5)) -plt.plot(x,numpy.cos(x)/x) -plt.tight_layout() - -plt.savefig(matplot_lib_filename) -print(matplot_lib_filename) +** Computing the median +#+begin_src python :results output :session *python* :exports both +med_x = np.median(x) +print(med_x) #+end_src #+RESULTS: -[[file:./cosxsx.png]] +: 14.5 -Note the parameter ~:exports results~, which indicates that the code -will not appear in the exported document. We recommend that in the -context of this MOOC, you always leave this parameter setting as -~:exports both~, because we want your analyses to be perfectly -transparent and reproducible. +** Computing the standard deviation +#+begin_src python :results output :session *python* :exports both +std_x = np.std(x,ddof=1) +print(std_x) +#+end_src -Watch out: the figure generated by the code block is /not/ stored in -the org document. It's a plain file, here named ~cosxsx.png~. You have -to commit it explicitly if you want your analysis to be legible and -understandable on GitLab. +#+RESULTS: +: 4.334094455301447 -Finally, don't forget that we provide in the resource section of this -MOOC a configuration with a few keyboard shortcuts that allow you to -quickly create code blocks in Python by typing ~
#+HTML_HEAD: -* Some explanations +* Data visualization +Making plots of data. -This is an org-mode document with code examples in R. Once opened in -Emacs, this document can easily be exported to HTML, PDF, and Office -formats. For more information on org-mode, see -https://orgmode.org/guide/. +** First we input the series/data. +#+begin_src python :results output :session *python* :exports both +import numpy as np +x=[14.0, 7.6, 11.2, 12.8, 12.5, 9.9, 14.9, 9.4, 16.9, 10.2, 14.9, 18.1, 7.3, 9.8, 10.9,12.2, 9.9, 2.9, 2.8, 15.4, 15.7, 9.7, 13.1, 13.2, 12.3, 11.7, 16.0, 12.4, 17.9, 12.2, 16.2, 18.7, 8.9, 11.9, 12.1, 14.6, 12.1, 4.7, 3.9, 16.9, 16.8, 11.3, 14.4, 15.7, 14.0, 13.6, 18.0, 13.6, 19.9, 13.7, 17.0, 20.5, 9.9, 12.5, 13.2, 16.1, 13.5, 6.3, 6.4, 17.6, 19.1, 12.8, 15.5, 16.3, 15.2, 14.6, 19.1, 14.4, 21.4, 15.1, 19.6, 21.7, 11.3, 15.0, 14.3, 16.8, 14.0, 6.8, 8.2, 19.9, 20.4, 14.6, 16.4, 18.7, 16.8, 15.8, 20.4, 15.8, 22.4, 16.2, 20.3, 23.4, 12.1, 15.5, 15.4, 18.4, 15.7, 10.2, 8.9, 21.0] +print(x) +#+end_src -When you type the shortcut =C-c C-e h o=, this document will be -exported as HTML. All the code in it will be re-executed, and the -results will be retrieved and included into the exported document. If -you do not want to re-execute all code each time, you can delete the # -and the space before ~#+PROPERTY:~ in the header of this document. +#+RESULTS: +: [14.0, 7.6, 11.2, 12.8, 12.5, 9.9, 14.9, 9.4, 16.9, 10.2, 14.9, 18.1, 7.3, 9.8, 10.9, 12.2, 9.9, 2.9, 2.8, 15.4, 15.7, 9.7, 13.1, 13.2, 12.3, 11.7, 16.0, 12.4, 17.9, 12.2, 16.2, 18.7, 8.9, 11.9, 12.1, 14.6, 12.1, 4.7, 3.9, 16.9, 16.8, 11.3, 14.4, 15.7, 14.0, 13.6, 18.0, 13.6, 19.9, 13.7, 17.0, 20.5, 9.9, 12.5, 13.2, 16.1, 13.5, 6.3, 6.4, 17.6, 19.1, 12.8, 15.5, 16.3, 15.2, 14.6, 19.1, 14.4, 21.4, 15.1, 19.6, 21.7, 11.3, 15.0, 14.3, 16.8, 14.0, 6.8, 8.2, 19.9, 20.4, 14.6, 16.4, 18.7, 16.8, 15.8, 20.4, 15.8, 22.4, 16.2, 20.3, 23.4, 12.1, 15.5, 15.4, 18.4, 15.7, 10.2, 8.9, 21.0] -Like we showed in the video, Python code is included as follows (and -is exxecuted by typing ~C-c C-c~): +** Now we plot the series -#+begin_src python :results output :exports both -print("Hello world!") +#+begin_src python :results output file :var matplot_lib_filename="matplot_lib_filename.png" :exports both :session *python* +import matplotlib.pyplot as plt + +plt.figure() +plt.plot(x,'b') +plt.grid(linestyle='dotted') +plt.axis('tight') +plt.xlim( 0,100 ) +plt.ylim( 0,25 ) +plt.title('Plotting series') + +plt.savefig(matplot_lib_filename) +print(matplot_lib_filename) #+end_src #+RESULTS: -: Hello world! - -And now the same but in an Python session. With a session, Python's -state, i.e. the values of all the variables, remains persistent from -one code block to the next. The code is still executed using ~C-c -C-c~. +[[file:matplot_lib_filename.png]] -#+begin_src python :results output :session :exports both -import numpy -x=numpy.linspace(-15,15) -print(x) +#+begin_src python :results output file :var matplot_lib_filename="matplot_lib_filename.png" :exports both :session *python* +plt.close('all') #+end_src #+RESULTS: -#+begin_example -[-15. -14.3877551 -13.7755102 -13.16326531 -12.55102041 - -11.93877551 -11.32653061 -10.71428571 -10.10204082 -9.48979592 - -8.87755102 -8.26530612 -7.65306122 -7.04081633 -6.42857143 - -5.81632653 -5.20408163 -4.59183673 -3.97959184 -3.36734694 - -2.75510204 -2.14285714 -1.53061224 -0.91836735 -0.30612245 - 0.30612245 0.91836735 1.53061224 2.14285714 2.75510204 - 3.36734694 3.97959184 4.59183673 5.20408163 5.81632653 - 6.42857143 7.04081633 7.65306122 8.26530612 8.87755102 - 9.48979592 10.10204082 10.71428571 11.32653061 11.93877551 - 12.55102041 13.16326531 13.7755102 14.3877551 15. ] -#+end_example - -Finally, an example for graphical output: -#+begin_src python :results output file :session :var matplot_lib_filename="./cosxsx.png" :exports results -import matplotlib.pyplot as plt +[[file:]] + +** Now the histogram + +#+begin_src python :results output file :var matplot_lib_filename="matplot_lib_hist.png" :exports both :session *python* -plt.figure(figsize=(10,5)) -plt.plot(x,numpy.cos(x)/x) -plt.tight_layout() +plt.figure() +plt.hist(x,color='b',histtype='bar',ec='black') +plt.grid(linestyle='dotted') +plt.axis('tight') +plt.xlim( 0,25 ) +plt.ylim( 0,25 ) +plt.title('Histogram series') plt.savefig(matplot_lib_filename) print(matplot_lib_filename) #+end_src #+RESULTS: -[[file:./cosxsx.png]] - -Note the parameter ~:exports results~, which indicates that the code -will not appear in the exported document. We recommend that in the -context of this MOOC, you always leave this parameter setting as -~:exports both~, because we want your analyses to be perfectly -transparent and reproducible. - -Watch out: the figure generated by the code block is /not/ stored in -the org document. It's a plain file, here named ~cosxsx.png~. You have -to commit it explicitly if you want your analysis to be legible and -understandable on GitLab. - -Finally, don't forget that we provide in the resource section of this -MOOC a configuration with a few keyboard shortcuts that allow you to -quickly create code blocks in Python by typing ~