diff --git a/module2/exo3/exercice_R_en.org b/module2/exo3/exercice_R_en.org index 2b73d64e82dad485ab562f8bda6434ffa7b68d27..786e917a478429265fb5023e792ddfb6130bf306 100644 --- a/module2/exo3/exercice_R_en.org +++ b/module2/exo3/exercice_R_en.org @@ -11,71 +11,129 @@ #+HTML_HEAD: #+HTML_HEAD: -* Some explanations - -This is an org-mode document with code examples in R. Once opened in -Emacs, this document can easily be exported to HTML, PDF, and Office -formats. For more information on org-mode, see -https://orgmode.org/guide/. - -When you type the shortcut =C-c C-e h o=, this document will be -exported as HTML. All the code in it will be re-executed, and the -results will be retrieved and included into the exported document. If -you do not want to re-execute all code each time, you can delete the # -and the space before ~#+PROPERTY:~ in the header of this document. - -Like we showed in the video, R code is included as follows (and is -exxecuted by typing ~C-c C-c~): - -#+begin_src R :results output :exports both -print("Hello world!") -#+end_src +* Data :noexport: +#+Begin_src R :session *R* :exports none +data <- c(14.0, 7.6, 11.2, 12.8, 12.5, 9.9, 14.9, 9.4, 16.9, 10.2, 14.9, 18.1, 7.3, 9.8, 10.9,12.2, 9.9, 2.9, 2.8, 15.4, 15.7, 9.7, 13.1, 13.2, 12.3, 11.7, 16.0, 12.4, 17.9, 12.2, 16.2, 18.7, 8.9, 11.9, 12.1, 14.6, 12.1, 4.7, 3.9, 16.9, 16.8, 11.3, 14.4, 15.7, 14.0, 13.6, 18.0, 13.6, 19.9, 13.7, 17.0, 20.5, 9.9, 12.5, 13.2, 16.1, 13.5, 6.3, 6.4, 17.6, 19.1, 12.8, 15.5, 16.3, 15.2, 14.6, 19.1, 14.4, 21.4, 15.1, 19.6, 21.7, 11.3, 15.0, 14.3, 16.8, 14.0, 6.8, 8.2, 19.9, 20.4, 14.6, 16.4, 18.7, 16.8, 15.8, 20.4, 15.8, 22.4, 16.2, 20.3, 23.4, 12.1, 15.5, 15.4, 18.4, 15.7, 10.2, 8.9, 21.0) +#+End_src #+RESULTS: -: [1] "Hello world!" - -And now the same but in an R session. This is the most frequent -situation, because R is really an interactive language. With a -session, R's state, i.e. the values of all the variables, remains -persistent from one code block to the next. The code is still executed -using ~C-c C-c~. - -#+begin_src R :results output :session *R* :exports both -summary(cars) -#+end_src +| 14 | +| 7.6 | +| 11.2 | +| 12.8 | +| 12.5 | +| 9.9 | +| 14.9 | +| 9.4 | +| 16.9 | +| 10.2 | +| 14.9 | +| 18.1 | +| 7.3 | +| 9.8 | +| 10.9 | +| 12.2 | +| 9.9 | +| 2.9 | +| 2.8 | +| 15.4 | +| 15.7 | +| 9.7 | +| 13.1 | +| 13.2 | +| 12.3 | +| 11.7 | +| 16 | +| 12.4 | +| 17.9 | +| 12.2 | +| 16.2 | +| 18.7 | +| 8.9 | +| 11.9 | +| 12.1 | +| 14.6 | +| 12.1 | +| 4.7 | +| 3.9 | +| 16.9 | +| 16.8 | +| 11.3 | +| 14.4 | +| 15.7 | +| 14 | +| 13.6 | +| 18 | +| 13.6 | +| 19.9 | +| 13.7 | +| 17 | +| 20.5 | +| 9.9 | +| 12.5 | +| 13.2 | +| 16.1 | +| 13.5 | +| 6.3 | +| 6.4 | +| 17.6 | +| 19.1 | +| 12.8 | +| 15.5 | +| 16.3 | +| 15.2 | +| 14.6 | +| 19.1 | +| 14.4 | +| 21.4 | +| 15.1 | +| 19.6 | +| 21.7 | +| 11.3 | +| 15 | +| 14.3 | +| 16.8 | +| 14 | +| 6.8 | +| 8.2 | +| 19.9 | +| 20.4 | +| 14.6 | +| 16.4 | +| 18.7 | +| 16.8 | +| 15.8 | +| 20.4 | +| 15.8 | +| 22.4 | +| 16.2 | +| 20.3 | +| 23.4 | +| 12.1 | +| 15.5 | +| 15.4 | +| 18.4 | +| 15.7 | +| 10.2 | +| 8.9 | +| 21 | + +* Line plot +In order to plot with the lines, we need to specify the argument =type=. + +#+Begin_src R :results output graphics file :file "./lines.png" :exports results :width 600 :height 400 :session *R* +plot(data, type="l") +#+End_src #+RESULTS: -: speed dist -: Min. : 4.0 Min. : 2.00 -: 1st Qu.:12.0 1st Qu.: 26.00 -: Median :15.0 Median : 36.00 -: Mean :15.4 Mean : 42.98 -: 3rd Qu.:19.0 3rd Qu.: 56.00 -: Max. :25.0 Max. :120.00 +[[file:./lines.png]] -Finally, an example for graphical output: -#+begin_src R :results output graphics :file "./cars.png" :exports results :width 600 :height 400 :session *R* -plot(cars) -#+end_src +* Histogram +For the histogram, we need to use =hist=: -#+RESULTS: -[[file:./cars.png]] - -Note the parameter ~:exports results~, which indicates that the code -will not appear in the exported document. We recommend that in the -context of this MOOC, you always leave this parameter setting as -~:exports both~, because we want your analyses to be perfectly -transparent and reproducible. - -Watch out: the figure generated by the code block is /not/ stored in -the org document. It's a plain file, here named ~cars.png~. You have -to commit it explicitly if you want your analysis to be legible and -understandable on GitLab. +#+Begin_src R :results output graphics file :file "./hist.png" :exports results :width 600 :height 400 :session *R* +hist(data) +#+End_src -Finally, don't forget that we provide in the resource section of this -MOOC a configuration with a few keyboard shortcuts that allow you to -quickly create code blocks in R by typing ~