From 29384c315872347a6d6f2d991a846d1bd2e72ac7 Mon Sep 17 00:00:00 2001
From: c4489d0ac1b4dc0c3726033b10607283
 <c4489d0ac1b4dc0c3726033b10607283@app-learninglab.inria.fr>
Date: Tue, 7 Jun 2022 09:29:30 +0000
Subject: [PATCH] url -> local

---
 .../influenza-like-illness-analysis.ipynb     | 39 +++++++++++++------
 ...cidence-PAY-3.csv => syndrome-grippal.csv} |  2 +-
 2 files changed, 28 insertions(+), 13 deletions(-)
 rename module3/exo1/{incidence-PAY-3.csv => syndrome-grippal.csv} (99%)

diff --git a/module3/exo1/influenza-like-illness-analysis.ipynb b/module3/exo1/influenza-like-illness-analysis.ipynb
index de71882..54cd62c 100644
--- a/module3/exo1/influenza-like-illness-analysis.ipynb
+++ b/module3/exo1/influenza-like-illness-analysis.ipynb
@@ -28,10 +28,8 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
-   "metadata": {
-    "collapsed": true
-   },
+   "execution_count": 15,
+   "metadata": {},
    "outputs": [],
    "source": [
     "data_url = \"http://www.sentiweb.fr/datasets/incidence-PAY-3.csv\""
@@ -63,29 +61,36 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "Data is stored in the local dir exo1, set the local path"
+    "Download data from url and save to the local dir (check if not exist)"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 12,
+   "execution_count": 18,
    "metadata": {},
    "outputs": [],
    "source": [
-    "local_path = 'incidence-PAY-3.csv'"
+    "data_file = \"syndrome-grippal.csv\"\n",
+    "\n",
+    "import os\n",
+    "import urllib.request\n",
+    "if not os.path.exists(data_file):\n",
+    "    urllib.request.urlretrieve(data_url, data_file)"
    ]
   },
   {
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "Now replace the data_url by the local_path"
+    "Now replace the data_url by the data_file "
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 13,
-   "metadata": {},
+   "execution_count": 20,
+   "metadata": {
+    "scrolled": true
+   },
    "outputs": [
     {
      "data": {
@@ -1049,16 +1054,26 @@
        "[1961 rows x 10 columns]"
       ]
      },
-     "execution_count": 13,
+     "execution_count": 20,
      "metadata": {},
      "output_type": "execute_result"
     }
    ],
    "source": [
-    "raw_data = pd.read_csv(local_path, skiprows=1)\n",
+    "\n",
+    "raw_data = pd.read_csv(data_file, skiprows=1)\n",
     "raw_data"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": 12,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "local_path = 'incidence-PAY-3.csv'"
+   ]
+  },
   {
    "cell_type": "markdown",
    "metadata": {},
diff --git a/module3/exo1/incidence-PAY-3.csv b/module3/exo1/syndrome-grippal.csv
similarity index 99%
rename from module3/exo1/incidence-PAY-3.csv
rename to module3/exo1/syndrome-grippal.csv
index db96e0f..3c95840 100644
--- a/module3/exo1/incidence-PAY-3.csv
+++ b/module3/exo1/syndrome-grippal.csv
@@ -1,4 +1,4 @@
-# @source="réseau Sentinelles, INSERM, Sorbonne Université, http://www.sentiweb.fr", @meta={"period":[198444,202221],"geo":["PAY","1"],"geo_ref":"insee","indicator":"3","type":"all","conf_int":true,"compact":false}, @date=2022-06-07T09:37:54+02:00
+# @source="réseau Sentinelles, INSERM, Sorbonne Université, http://www.sentiweb.fr", @meta={"period":[198444,202221],"geo":["PAY","1"],"geo_ref":"insee","indicator":"3","type":"all","conf_int":true,"compact":false}, @date=2022-06-07T10:39:55+02:00
 week,indicator,inc,inc_low,inc_up,inc100,inc100_low,inc100_up,geo_insee,geo_name
 202221,3,17538,12255,22821,26,18,34,FR,France
 202220,3,20413,16271,24555,31,25,37,FR,France
-- 
2.18.1