diff --git a/module3/exo1/analyse-syndrome-grippal.ipynb b/module3/exo1/analyse-syndrome-grippal.ipynb index 59d72b5b58a3ae26346460dd39e62a39c55243d7..4972720eaa7635c84ad36b458825faa0b3b7edde 100644 --- a/module3/exo1/analyse-syndrome-grippal.ipynb +++ b/module3/exo1/analyse-syndrome-grippal.ipynb @@ -9,7 +9,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 25, "metadata": {}, "outputs": [], "source": [ @@ -28,13 +28,29 @@ }, { "cell_type": "code", - "execution_count": null, - "metadata": { - "collapsed": true - }, - "outputs": [], + "execution_count": 28, + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "a local copy of the data-file is not available; by default, select the data-file available at the prescribed url !\n", + "pathToInputData = http://www.sentiweb.fr/datasets/incidence-PAY-3.csv\n" + ] + } + ], "source": [ - "data_url = \"http://www.sentiweb.fr/datasets/incidence-PAY-3.csv\"" + "pathToLocalInputData=\"\" # \"C:/Users/hpascalj/__DataSets/incidence-PAY-3.csv\"\n", + "# The file should be a local copy of the data-file mentioned into the lecture \n", + "#\n", + "if pathToLocalInputData == \"\" : \n", + " print (\"a local copy of the data-file is not available; by default, select the data-file available at the prescribed url !\")\n", + " pathToInputData=\"http://www.sentiweb.fr/datasets/incidence-PAY-3.csv\" # in principle valid\n", + "else :\n", + " pathToInputData = pathToLocalInputData\n", + "#\n", + "print (\"pathToInputData = \", pathToInputData)" ] }, { @@ -61,11 +77,978 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 29, "metadata": {}, - "outputs": [], + "outputs": [ + { + "data": { + "text/html": [ + "
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weekindicatorincinc_lowinc_upinc100inc100_lowinc100_upgeo_inseegeo_name
0202012387656177.011353.0139.017.0FRFrance
1202011310175693701.0109811.0155143.0167.0FRFrance
2202010310497796650.0113304.0159146.0172.0FRFrance
32020093110696102066.0119326.0168155.0181.0FRFrance
42020083143753133984.0153522.0218203.0233.0FRFrance
52020073183610172812.0194408.0279263.0295.0FRFrance
62020063206669195481.0217857.0314297.0331.0FRFrance
72020053187957177445.0198469.0285269.0301.0FRFrance
82020043122331113492.0131170.0186173.0199.0FRFrance
920200337841371330.085496.0119108.0130.0FRFrance
1020200235361447654.059574.08172.090.0FRFrance
1120200133685031608.042092.05648.064.0FRFrance
1220195232813523220.033050.04336.050.0FRFrance
1320195132978625042.034530.04538.052.0FRFrance
1420195033422329156.039290.05244.060.0FRFrance
1520194932566221414.029910.03933.045.0FRFrance
1620194832236718055.026679.03427.041.0FRFrance
1720194731866914759.022579.02822.034.0FRFrance
1820194631603012567.019493.02419.029.0FRFrance
192019453101387160.013116.01510.020.0FRFrance
20201944378225010.010634.0128.016.0FRFrance
21201943394876448.012526.0149.019.0FRFrance
22201942377475243.010251.0128.016.0FRFrance
23201941371224720.09524.0117.015.0FRFrance
24201940385055784.011226.0139.017.0FRFrance
25201939370914462.09720.0117.015.0FRFrance
26201938348972891.06903.074.010.0FRFrance
27201937331721367.04977.052.08.0FRFrance
2820193632295728.03862.031.05.0FRFrance
29201935310102.02018.020.04.0FRFrance
.................................
181719852132609619621.032571.04735.059.0FRFrance
181819852032789620885.034907.05138.064.0FRFrance
181919851934315432821.053487.07859.097.0FRFrance
182019851834055529935.051175.07455.093.0FRFrance
182119851733405324366.043740.06244.080.0FRFrance
182219851635036236451.064273.09166.0116.0FRFrance
182319851536388145538.082224.011683.0149.0FRFrance
18241985143134545114400.0154690.0244207.0281.0FRFrance
18251985133197206176080.0218332.0357319.0395.0FRFrance
18261985123245240223304.0267176.0445405.0485.0FRFrance
18271985113276205252399.0300011.0501458.0544.0FRFrance
18281985103353231326279.0380183.0640591.0689.0FRFrance
18291985093369895341109.0398681.0670618.0722.0FRFrance
18301985083389886359529.0420243.0707652.0762.0FRFrance
18311985073471852432599.0511105.0855784.0926.0FRFrance
18321985063565825518011.0613639.01026939.01113.0FRFrance
18331985053637302592795.0681809.011551074.01236.0FRFrance
18341985043424937390794.0459080.0770708.0832.0FRFrance
18351985033213901174689.0253113.0388317.0459.0FRFrance
183619850239758680949.0114223.0177147.0207.0FRFrance
183719850138548965918.0105060.0155120.0190.0FRFrance
183819845238483060602.0109058.0154110.0198.0FRFrance
1839198451310172680242.0123210.0185146.0224.0FRFrance
18401984503123680101401.0145959.0225184.0266.0FRFrance
1841198449310107381684.0120462.0184149.0219.0FRFrance
184219844837862060634.096606.0143110.0176.0FRFrance
184319844737202954274.089784.013199.0163.0FRFrance
184419844638733067686.0106974.0159123.0195.0FRFrance
18451984453135223101414.0169032.0246184.0308.0FRFrance
184619844436842220056.0116788.012537.0213.0FRFrance
\n", + "

1847 rows × 10 columns

\n", + "
" + ], + "text/plain": [ + " week indicator inc inc_low inc_up inc100 inc100_low \\\n", + "0 202012 3 8765 6177.0 11353.0 13 9.0 \n", + "1 202011 3 101756 93701.0 109811.0 155 143.0 \n", + "2 202010 3 104977 96650.0 113304.0 159 146.0 \n", + "3 202009 3 110696 102066.0 119326.0 168 155.0 \n", + "4 202008 3 143753 133984.0 153522.0 218 203.0 \n", + "5 202007 3 183610 172812.0 194408.0 279 263.0 \n", + "6 202006 3 206669 195481.0 217857.0 314 297.0 \n", + "7 202005 3 187957 177445.0 198469.0 285 269.0 \n", + "8 202004 3 122331 113492.0 131170.0 186 173.0 \n", + "9 202003 3 78413 71330.0 85496.0 119 108.0 \n", + "10 202002 3 53614 47654.0 59574.0 81 72.0 \n", + "11 202001 3 36850 31608.0 42092.0 56 48.0 \n", + "12 201952 3 28135 23220.0 33050.0 43 36.0 \n", + "13 201951 3 29786 25042.0 34530.0 45 38.0 \n", + "14 201950 3 34223 29156.0 39290.0 52 44.0 \n", + "15 201949 3 25662 21414.0 29910.0 39 33.0 \n", + "16 201948 3 22367 18055.0 26679.0 34 27.0 \n", + "17 201947 3 18669 14759.0 22579.0 28 22.0 \n", + "18 201946 3 16030 12567.0 19493.0 24 19.0 \n", + "19 201945 3 10138 7160.0 13116.0 15 10.0 \n", + "20 201944 3 7822 5010.0 10634.0 12 8.0 \n", + "21 201943 3 9487 6448.0 12526.0 14 9.0 \n", + "22 201942 3 7747 5243.0 10251.0 12 8.0 \n", + "23 201941 3 7122 4720.0 9524.0 11 7.0 \n", + "24 201940 3 8505 5784.0 11226.0 13 9.0 \n", + "25 201939 3 7091 4462.0 9720.0 11 7.0 \n", + "26 201938 3 4897 2891.0 6903.0 7 4.0 \n", + "27 201937 3 3172 1367.0 4977.0 5 2.0 \n", + "28 201936 3 2295 728.0 3862.0 3 1.0 \n", + "29 201935 3 1010 2.0 2018.0 2 0.0 \n", + "... ... ... ... ... ... ... ... \n", + "1817 198521 3 26096 19621.0 32571.0 47 35.0 \n", + "1818 198520 3 27896 20885.0 34907.0 51 38.0 \n", + "1819 198519 3 43154 32821.0 53487.0 78 59.0 \n", + "1820 198518 3 40555 29935.0 51175.0 74 55.0 \n", + "1821 198517 3 34053 24366.0 43740.0 62 44.0 \n", + "1822 198516 3 50362 36451.0 64273.0 91 66.0 \n", + "1823 198515 3 63881 45538.0 82224.0 116 83.0 \n", + "1824 198514 3 134545 114400.0 154690.0 244 207.0 \n", + "1825 198513 3 197206 176080.0 218332.0 357 319.0 \n", + "1826 198512 3 245240 223304.0 267176.0 445 405.0 \n", + "1827 198511 3 276205 252399.0 300011.0 501 458.0 \n", + "1828 198510 3 353231 326279.0 380183.0 640 591.0 \n", + "1829 198509 3 369895 341109.0 398681.0 670 618.0 \n", + "1830 198508 3 389886 359529.0 420243.0 707 652.0 \n", + "1831 198507 3 471852 432599.0 511105.0 855 784.0 \n", + "1832 198506 3 565825 518011.0 613639.0 1026 939.0 \n", + "1833 198505 3 637302 592795.0 681809.0 1155 1074.0 \n", + "1834 198504 3 424937 390794.0 459080.0 770 708.0 \n", + "1835 198503 3 213901 174689.0 253113.0 388 317.0 \n", + "1836 198502 3 97586 80949.0 114223.0 177 147.0 \n", + "1837 198501 3 85489 65918.0 105060.0 155 120.0 \n", + "1838 198452 3 84830 60602.0 109058.0 154 110.0 \n", + "1839 198451 3 101726 80242.0 123210.0 185 146.0 \n", + "1840 198450 3 123680 101401.0 145959.0 225 184.0 \n", + "1841 198449 3 101073 81684.0 120462.0 184 149.0 \n", + "1842 198448 3 78620 60634.0 96606.0 143 110.0 \n", + "1843 198447 3 72029 54274.0 89784.0 131 99.0 \n", + "1844 198446 3 87330 67686.0 106974.0 159 123.0 \n", + "1845 198445 3 135223 101414.0 169032.0 246 184.0 \n", + "1846 198444 3 68422 20056.0 116788.0 125 37.0 \n", + "\n", + " inc100_up geo_insee geo_name \n", + "0 17.0 FR France \n", + "1 167.0 FR France \n", + "2 172.0 FR France \n", + "3 181.0 FR France \n", + "4 233.0 FR France \n", + "5 295.0 FR France \n", + "6 331.0 FR France \n", + "7 301.0 FR France \n", + "8 199.0 FR France \n", + "9 130.0 FR France \n", + "10 90.0 FR France \n", + "11 64.0 FR France \n", + "12 50.0 FR France \n", + "13 52.0 FR France \n", + "14 60.0 FR France \n", + "15 45.0 FR France \n", + "16 41.0 FR France \n", + "17 34.0 FR France \n", + "18 29.0 FR France \n", + "19 20.0 FR France \n", + "20 16.0 FR France \n", + "21 19.0 FR France \n", + "22 16.0 FR France \n", + "23 15.0 FR France \n", + "24 17.0 FR France \n", + "25 15.0 FR France \n", + "26 10.0 FR France \n", + "27 8.0 FR France \n", + "28 5.0 FR France \n", + "29 4.0 FR France \n", + "... ... ... ... \n", + "1817 59.0 FR France \n", + "1818 64.0 FR France \n", + "1819 97.0 FR France \n", + "1820 93.0 FR France \n", + "1821 80.0 FR France \n", + "1822 116.0 FR France \n", + "1823 149.0 FR France \n", + "1824 281.0 FR France \n", + "1825 395.0 FR France \n", + "1826 485.0 FR France \n", + "1827 544.0 FR France \n", + "1828 689.0 FR France \n", + "1829 722.0 FR France \n", + "1830 762.0 FR France \n", + "1831 926.0 FR France \n", + "1832 1113.0 FR France \n", + "1833 1236.0 FR France \n", + "1834 832.0 FR France \n", + "1835 459.0 FR France \n", + "1836 207.0 FR France \n", + "1837 190.0 FR France \n", + "1838 198.0 FR France \n", + "1839 224.0 FR France \n", + "1840 266.0 FR France \n", + "1841 219.0 FR France \n", + "1842 176.0 FR France \n", + "1843 163.0 FR France \n", + "1844 195.0 FR France \n", + "1845 308.0 FR France \n", + "1846 213.0 FR France \n", + "\n", + "[1847 rows x 10 columns]" + ] + }, + "execution_count": 29, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ - "raw_data = pd.read_csv(data_url, skiprows=1)\n", + "raw_data = pd.read_csv(pathToInputData, skiprows=1)\n", "raw_data" ] }, @@ -364,7 +1347,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.6.1" + "version": "3.6.4" } }, "nbformat": 4,