diff --git a/module3/exo2/exercice_fr.ipynb b/module3/exo2/exercice_fr.ipynb index 0bbbe371b01e359e381e43239412d77bf53fb1fb..3ac90635a7621e4670c7e604663e977c533d8874 100644 --- a/module3/exo2/exercice_fr.ipynb +++ b/module3/exo2/exercice_fr.ipynb @@ -1,5 +1,3101 @@ { - "cells": [], + "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "### Étude des épidémies de varicelle" + ] + }, + { + "cell_type": "code", + "execution_count": 1, + "metadata": {}, + "outputs": [], + "source": [ + "%matplotlib inline\n", + "import matplotlib.pyplot as plt\n", + "import pandas as pd\n", + "import isoweek" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Les données d'étude des épidémies de varicelle sont disponibles sur le site Web du Réseau Sentinelles. Nous les récupérons sous forme d'un fichier en format CSV dont chaque ligne correspond à une semaine de la période demandée. Nous téléchargeons toujours le jeu de données complet, qui commence en 1990 et se termine avec une semaine récente." + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "metadata": {}, + "outputs": [], + "source": [ + "data_url = \"https://www.sentiweb.fr/datasets/all/inc-7-PAY.csv\"" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "La première ligne du fichier CSV est un commentaire, que nous ignorons en précisant `skiprows=1`. Pour les autres lignes, les données sont (de gauche à droite) :\n", + "- date au format YYYYWW (année, numéro de la semaine)\n", + "- code de l'indicateur de surveillance\n", + "- estimation de l'incidence de consultations en nombre de cas \n", + "- estimation de la borne inférieure de l'IC95% du nombre de cas de consultation\n", + "- estimation de la borne supérieure de l'IC95% du nombre de cas de consultation\n", + "- estimation du taux d'incidence du nombre de cas de consultation (en cas pour 100,000 habitants)\n", + "- estimation de la borne inférieure de l'IC95% du taux d'incidence du nombre de cas de consultation (en cas pour 100,000 habitants)\n", + "- estimation de la borne supérieure de l'IC95% du taux d'incidence du nombre de cas de consultation (en cas pour 100,000 habitants)\n", + "- code de la zone géographique concernée (Code INSEE) http://www.insee.fr/fr/methodes/nomenclatures/cog/\n", + "- libellé de la zone géographique (ce libellé peut être modifié sans préavis) " + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "
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weekindicatorincinc_lowinc_upinc100inc100_lowinc100_upgeo_inseegeo_name
02025067372120615381648FRFrance
12025057208710563118315FRFrance
2202504768954466932410614FRFrance
32025037246211613763426FRFrance
420250275966275791759414FRFrance
520250176059245196679414FRFrance
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720245174670223971017311FRFrance
82024507736344381028811715FRFrance
920244976077363185239513FRFrance
1020244874189145469246210FRFrance
11202447719317263136315FRFrance
12202446722608633657315FRFrance
132024457271312164210426FRFrance
14202444721356763594315FRFrance
15202443721246413607315FRFrance
162024427262112463996426FRFrance
17202441720353813689315FRFrance
18202440721257253525315FRFrance
192024397289813334463426FRFrance
20202438775101513102FRFrance
212024377916281804102FRFrance
22202436722358703600315FRFrance
23202435716202852955204FRFrance
24202434725606224498417FRFrance
25202433719715363406315FRFrance
2620243274399194468547311FRFrance
2720243174500221367877410FRFrance
28202430770044278973011715FRFrance
2920242979270630312237141018FRFrance
.................................
17541991267176081130423912312042FRFrance
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1758199122715452995320951271737FRFrance
1759199121714903897520831261636FRFrance
17601991207190531274225364342345FRFrance
17611991197167391124622232291939FRFrance
17621991187213851388228888382551FRFrance
1763199117713462887718047241632FRFrance
17641991167148571006819646261834FRFrance
1765199115713975978118169251832FRFrance
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1773199107712337807716597221529FRFrance
1774199106710877701314741191226FRFrance
1775199105710442654414340181125FRFrance
17761991047791345631126314820FRFrance
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17791991017155651027120859271836FRFrance
17801990527193751329525455342345FRFrance
17811990517190801380724353342543FRFrance
1782199050711079666015498201228FRFrance
17831990497114302610205FRFrance
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1784 rows × 10 columns

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" + ], + "text/plain": [ + " week indicator inc inc_low inc_up inc100 inc100_low \\\n", + "0 202506 7 3721 2061 5381 6 4 \n", + "1 202505 7 2087 1056 3118 3 1 \n", + "2 202504 7 6895 4466 9324 10 6 \n", + "3 202503 7 2462 1161 3763 4 2 \n", + "4 202502 7 5966 2757 9175 9 4 \n", + "5 202501 7 6059 2451 9667 9 4 \n", + "6 202452 7 4356 1776 6936 7 3 \n", + "7 202451 7 4670 2239 7101 7 3 \n", + "8 202450 7 7363 4438 10288 11 7 \n", + "9 202449 7 6077 3631 8523 9 5 \n", + "10 202448 7 4189 1454 6924 6 2 \n", + "11 202447 7 1931 726 3136 3 1 \n", + "12 202446 7 2260 863 3657 3 1 \n", + "13 202445 7 2713 1216 4210 4 2 \n", + "14 202444 7 2135 676 3594 3 1 \n", + "15 202443 7 2124 641 3607 3 1 \n", + "16 202442 7 2621 1246 3996 4 2 \n", + "17 202441 7 2035 381 3689 3 1 \n", + "18 202440 7 2125 725 3525 3 1 \n", + "19 202439 7 2898 1333 4463 4 2 \n", + "20 202438 7 751 0 1513 1 0 \n", + "21 202437 7 916 28 1804 1 0 \n", + "22 202436 7 2235 870 3600 3 1 \n", + "23 202435 7 1620 285 2955 2 0 \n", + "24 202434 7 2560 622 4498 4 1 \n", + "25 202433 7 1971 536 3406 3 1 \n", + "26 202432 7 4399 1944 6854 7 3 \n", + "27 202431 7 4500 2213 6787 7 4 \n", + "28 202430 7 7004 4278 9730 11 7 \n", + "29 202429 7 9270 6303 12237 14 10 \n", + "... ... ... ... ... ... ... ... \n", + "1754 199126 7 17608 11304 23912 31 20 \n", + "1755 199125 7 16169 10700 21638 28 18 \n", + "1756 199124 7 16171 10071 22271 28 17 \n", + "1757 199123 7 11947 7671 16223 21 13 \n", + "1758 199122 7 15452 9953 20951 27 17 \n", + "1759 199121 7 14903 8975 20831 26 16 \n", + "1760 199120 7 19053 12742 25364 34 23 \n", + "1761 199119 7 16739 11246 22232 29 19 \n", + "1762 199118 7 21385 13882 28888 38 25 \n", + "1763 199117 7 13462 8877 18047 24 16 \n", + "1764 199116 7 14857 10068 19646 26 18 \n", + "1765 199115 7 13975 9781 18169 25 18 \n", + "1766 199114 7 12265 7684 16846 22 14 \n", + "1767 199113 7 9567 6041 13093 17 11 \n", + "1768 199112 7 10864 7331 14397 19 13 \n", + "1769 199111 7 15574 11184 19964 27 19 \n", + "1770 199110 7 16643 11372 21914 29 20 \n", + "1771 199109 7 13741 8780 18702 24 15 \n", + "1772 199108 7 13289 8813 17765 23 15 \n", + "1773 199107 7 12337 8077 16597 22 15 \n", + "1774 199106 7 10877 7013 14741 19 12 \n", + "1775 199105 7 10442 6544 14340 18 11 \n", + "1776 199104 7 7913 4563 11263 14 8 \n", + "1777 199103 7 15387 10484 20290 27 18 \n", + "1778 199102 7 16277 11046 21508 29 20 \n", + "1779 199101 7 15565 10271 20859 27 18 \n", + "1780 199052 7 19375 13295 25455 34 23 \n", + "1781 199051 7 19080 13807 24353 34 25 \n", + "1782 199050 7 11079 6660 15498 20 12 \n", + "1783 199049 7 1143 0 2610 2 0 \n", + "\n", + " inc100_up geo_insee geo_name \n", + "0 8 FR France \n", + "1 5 FR France \n", + "2 14 FR France \n", + "3 6 FR France \n", + "4 14 FR France \n", + "5 14 FR France \n", + "6 11 FR France \n", + "7 11 FR France \n", + "8 15 FR France \n", + "9 13 FR France \n", + "10 10 FR France \n", + "11 5 FR France \n", + "12 5 FR France \n", + "13 6 FR France \n", + "14 5 FR France \n", + "15 5 FR France \n", + "16 6 FR France \n", + "17 5 FR France \n", + "18 5 FR France \n", + "19 6 FR France \n", + "20 2 FR France \n", + "21 2 FR France \n", + "22 5 FR France \n", + "23 4 FR France \n", + "24 7 FR France \n", + "25 5 FR France \n", + "26 11 FR France \n", + "27 10 FR France \n", + "28 15 FR France \n", + "29 18 FR France \n", + "... ... ... ... \n", + "1754 42 FR France \n", + "1755 38 FR France \n", + "1756 39 FR France \n", + "1757 29 FR France \n", + "1758 37 FR France \n", + "1759 36 FR France \n", + "1760 45 FR France \n", + "1761 39 FR France \n", + "1762 51 FR France \n", + "1763 32 FR France \n", + "1764 34 FR France \n", + "1765 32 FR France \n", + "1766 30 FR France \n", + "1767 23 FR France \n", + "1768 25 FR France \n", + "1769 35 FR France \n", + "1770 38 FR France \n", + "1771 33 FR France \n", + "1772 31 FR France \n", + "1773 29 FR France \n", + "1774 26 FR France \n", + "1775 25 FR France \n", + "1776 20 FR France \n", + "1777 36 FR France \n", + "1778 38 FR France \n", + "1779 36 FR France \n", + "1780 45 FR France \n", + "1781 43 FR France \n", + "1782 28 FR France \n", + "1783 5 FR France \n", + "\n", + "[1784 rows x 10 columns]" + ] + }, + "execution_count": 3, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "raw_data = pd.read_csv(data_url, encoding = 'iso-8859-1', skiprows=1)\n", + "raw_data" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Il ne semble pas y avoir de donnée manquante dans ce document." + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Nous corrigeons le format des données qui ne correspondent pas tout à fait à la norme iso8859-1." + ] + }, + { + "cell_type": "code", + "execution_count": 4, + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "
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weekindicatorincinc_lowinc_upinc100inc100_lowinc100_upgeo_inseegeo_nameperiod
02025067372120615381648FRFrance2025-02-03/2025-02-09
12025057208710563118315FRFrance2025-01-27/2025-02-02
2202504768954466932410614FRFrance2025-01-20/2025-01-26
32025037246211613763426FRFrance2025-01-13/2025-01-19
420250275966275791759414FRFrance2025-01-06/2025-01-12
520250176059245196679414FRFrance2024-12-30/2025-01-05
620245274356177669367311FRFrance2024-12-23/2024-12-29
720245174670223971017311FRFrance2024-12-16/2024-12-22
82024507736344381028811715FRFrance2024-12-09/2024-12-15
920244976077363185239513FRFrance2024-12-02/2024-12-08
1020244874189145469246210FRFrance2024-11-25/2024-12-01
11202447719317263136315FRFrance2024-11-18/2024-11-24
12202446722608633657315FRFrance2024-11-11/2024-11-17
132024457271312164210426FRFrance2024-11-04/2024-11-10
14202444721356763594315FRFrance2024-10-28/2024-11-03
15202443721246413607315FRFrance2024-10-21/2024-10-27
162024427262112463996426FRFrance2024-10-14/2024-10-20
17202441720353813689315FRFrance2024-10-07/2024-10-13
18202440721257253525315FRFrance2024-09-30/2024-10-06
192024397289813334463426FRFrance2024-09-23/2024-09-29
20202438775101513102FRFrance2024-09-16/2024-09-22
212024377916281804102FRFrance2024-09-09/2024-09-15
22202436722358703600315FRFrance2024-09-02/2024-09-08
23202435716202852955204FRFrance2024-08-26/2024-09-01
24202434725606224498417FRFrance2024-08-19/2024-08-25
25202433719715363406315FRFrance2024-08-12/2024-08-18
2620243274399194468547311FRFrance2024-08-05/2024-08-11
2720243174500221367877410FRFrance2024-07-29/2024-08-04
28202430770044278973011715FRFrance2024-07-22/2024-07-28
2920242979270630312237141018FRFrance2024-07-15/2024-07-21
....................................
17541991267176081130423912312042FRFrance1991-06-24/1991-06-30
17551991257161691070021638281838FRFrance1991-06-17/1991-06-23
17561991247161711007122271281739FRFrance1991-06-10/1991-06-16
1757199123711947767116223211329FRFrance1991-06-03/1991-06-09
1758199122715452995320951271737FRFrance1991-05-27/1991-06-02
1759199121714903897520831261636FRFrance1991-05-20/1991-05-26
17601991207190531274225364342345FRFrance1991-05-13/1991-05-19
17611991197167391124622232291939FRFrance1991-05-06/1991-05-12
17621991187213851388228888382551FRFrance1991-04-29/1991-05-05
1763199117713462887718047241632FRFrance1991-04-22/1991-04-28
17641991167148571006819646261834FRFrance1991-04-15/1991-04-21
1765199115713975978118169251832FRFrance1991-04-08/1991-04-14
1766199114712265768416846221430FRFrance1991-04-01/1991-04-07
176719911379567604113093171123FRFrance1991-03-25/1991-03-31
1768199112710864733114397191325FRFrance1991-03-18/1991-03-24
17691991117155741118419964271935FRFrance1991-03-11/1991-03-17
17701991107166431137221914292038FRFrance1991-03-04/1991-03-10
1771199109713741878018702241533FRFrance1991-02-25/1991-03-03
1772199108713289881317765231531FRFrance1991-02-18/1991-02-24
1773199107712337807716597221529FRFrance1991-02-11/1991-02-17
1774199106710877701314741191226FRFrance1991-02-04/1991-02-10
1775199105710442654414340181125FRFrance1991-01-28/1991-02-03
17761991047791345631126314820FRFrance1991-01-21/1991-01-27
17771991037153871048420290271836FRFrance1991-01-14/1991-01-20
17781991027162771104621508292038FRFrance1991-01-07/1991-01-13
17791991017155651027120859271836FRFrance1990-12-31/1991-01-06
17801990527193751329525455342345FRFrance1990-12-24/1990-12-30
17811990517190801380724353342543FRFrance1990-12-17/1990-12-23
1782199050711079666015498201228FRFrance1990-12-10/1990-12-16
17831990497114302610205FRFrance1990-12-03/1990-12-09
\n", + "

1784 rows × 11 columns

\n", + "
" + ], + "text/plain": [ + " week indicator inc inc_low inc_up inc100 inc100_low \\\n", + "0 202506 7 3721 2061 5381 6 4 \n", + "1 202505 7 2087 1056 3118 3 1 \n", + "2 202504 7 6895 4466 9324 10 6 \n", + "3 202503 7 2462 1161 3763 4 2 \n", + "4 202502 7 5966 2757 9175 9 4 \n", + "5 202501 7 6059 2451 9667 9 4 \n", + "6 202452 7 4356 1776 6936 7 3 \n", + "7 202451 7 4670 2239 7101 7 3 \n", + "8 202450 7 7363 4438 10288 11 7 \n", + "9 202449 7 6077 3631 8523 9 5 \n", + "10 202448 7 4189 1454 6924 6 2 \n", + "11 202447 7 1931 726 3136 3 1 \n", + "12 202446 7 2260 863 3657 3 1 \n", + "13 202445 7 2713 1216 4210 4 2 \n", + "14 202444 7 2135 676 3594 3 1 \n", + "15 202443 7 2124 641 3607 3 1 \n", + "16 202442 7 2621 1246 3996 4 2 \n", + "17 202441 7 2035 381 3689 3 1 \n", + "18 202440 7 2125 725 3525 3 1 \n", + "19 202439 7 2898 1333 4463 4 2 \n", + "20 202438 7 751 0 1513 1 0 \n", + "21 202437 7 916 28 1804 1 0 \n", + "22 202436 7 2235 870 3600 3 1 \n", + "23 202435 7 1620 285 2955 2 0 \n", + "24 202434 7 2560 622 4498 4 1 \n", + "25 202433 7 1971 536 3406 3 1 \n", + "26 202432 7 4399 1944 6854 7 3 \n", + "27 202431 7 4500 2213 6787 7 4 \n", + "28 202430 7 7004 4278 9730 11 7 \n", + "29 202429 7 9270 6303 12237 14 10 \n", + "... ... ... ... ... ... ... ... \n", + "1754 199126 7 17608 11304 23912 31 20 \n", + "1755 199125 7 16169 10700 21638 28 18 \n", + "1756 199124 7 16171 10071 22271 28 17 \n", + "1757 199123 7 11947 7671 16223 21 13 \n", + "1758 199122 7 15452 9953 20951 27 17 \n", + "1759 199121 7 14903 8975 20831 26 16 \n", + "1760 199120 7 19053 12742 25364 34 23 \n", + "1761 199119 7 16739 11246 22232 29 19 \n", + "1762 199118 7 21385 13882 28888 38 25 \n", + "1763 199117 7 13462 8877 18047 24 16 \n", + "1764 199116 7 14857 10068 19646 26 18 \n", + "1765 199115 7 13975 9781 18169 25 18 \n", + "1766 199114 7 12265 7684 16846 22 14 \n", + "1767 199113 7 9567 6041 13093 17 11 \n", + "1768 199112 7 10864 7331 14397 19 13 \n", + "1769 199111 7 15574 11184 19964 27 19 \n", + "1770 199110 7 16643 11372 21914 29 20 \n", + "1771 199109 7 13741 8780 18702 24 15 \n", + "1772 199108 7 13289 8813 17765 23 15 \n", + "1773 199107 7 12337 8077 16597 22 15 \n", + "1774 199106 7 10877 7013 14741 19 12 \n", + "1775 199105 7 10442 6544 14340 18 11 \n", + "1776 199104 7 7913 4563 11263 14 8 \n", + "1777 199103 7 15387 10484 20290 27 18 \n", + "1778 199102 7 16277 11046 21508 29 20 \n", + "1779 199101 7 15565 10271 20859 27 18 \n", + "1780 199052 7 19375 13295 25455 34 23 \n", + "1781 199051 7 19080 13807 24353 34 25 \n", + "1782 199050 7 11079 6660 15498 20 12 \n", + "1783 199049 7 1143 0 2610 2 0 \n", + "\n", + " inc100_up geo_insee geo_name period \n", + "0 8 FR France 2025-02-03/2025-02-09 \n", + "1 5 FR France 2025-01-27/2025-02-02 \n", + "2 14 FR France 2025-01-20/2025-01-26 \n", + "3 6 FR France 2025-01-13/2025-01-19 \n", + "4 14 FR France 2025-01-06/2025-01-12 \n", + "5 14 FR France 2024-12-30/2025-01-05 \n", + "6 11 FR France 2024-12-23/2024-12-29 \n", + "7 11 FR France 2024-12-16/2024-12-22 \n", + "8 15 FR France 2024-12-09/2024-12-15 \n", + "9 13 FR France 2024-12-02/2024-12-08 \n", + "10 10 FR France 2024-11-25/2024-12-01 \n", + "11 5 FR France 2024-11-18/2024-11-24 \n", + "12 5 FR France 2024-11-11/2024-11-17 \n", + "13 6 FR France 2024-11-04/2024-11-10 \n", + "14 5 FR France 2024-10-28/2024-11-03 \n", + "15 5 FR France 2024-10-21/2024-10-27 \n", + "16 6 FR France 2024-10-14/2024-10-20 \n", + "17 5 FR France 2024-10-07/2024-10-13 \n", + "18 5 FR France 2024-09-30/2024-10-06 \n", + "19 6 FR France 2024-09-23/2024-09-29 \n", + "20 2 FR France 2024-09-16/2024-09-22 \n", + "21 2 FR France 2024-09-09/2024-09-15 \n", + "22 5 FR France 2024-09-02/2024-09-08 \n", + "23 4 FR France 2024-08-26/2024-09-01 \n", + "24 7 FR France 2024-08-19/2024-08-25 \n", + "25 5 FR France 2024-08-12/2024-08-18 \n", + "26 11 FR France 2024-08-05/2024-08-11 \n", + "27 10 FR France 2024-07-29/2024-08-04 \n", + "28 15 FR France 2024-07-22/2024-07-28 \n", + "29 18 FR France 2024-07-15/2024-07-21 \n", + "... ... ... ... ... \n", + "1754 42 FR France 1991-06-24/1991-06-30 \n", + "1755 38 FR France 1991-06-17/1991-06-23 \n", + "1756 39 FR France 1991-06-10/1991-06-16 \n", + "1757 29 FR France 1991-06-03/1991-06-09 \n", + "1758 37 FR France 1991-05-27/1991-06-02 \n", + "1759 36 FR France 1991-05-20/1991-05-26 \n", + "1760 45 FR France 1991-05-13/1991-05-19 \n", + "1761 39 FR France 1991-05-06/1991-05-12 \n", + "1762 51 FR France 1991-04-29/1991-05-05 \n", + "1763 32 FR France 1991-04-22/1991-04-28 \n", + "1764 34 FR France 1991-04-15/1991-04-21 \n", + "1765 32 FR France 1991-04-08/1991-04-14 \n", + "1766 30 FR France 1991-04-01/1991-04-07 \n", + "1767 23 FR France 1991-03-25/1991-03-31 \n", + "1768 25 FR France 1991-03-18/1991-03-24 \n", + "1769 35 FR France 1991-03-11/1991-03-17 \n", + "1770 38 FR France 1991-03-04/1991-03-10 \n", + "1771 33 FR France 1991-02-25/1991-03-03 \n", + "1772 31 FR France 1991-02-18/1991-02-24 \n", + "1773 29 FR France 1991-02-11/1991-02-17 \n", + "1774 26 FR France 1991-02-04/1991-02-10 \n", + "1775 25 FR France 1991-01-28/1991-02-03 \n", + "1776 20 FR France 1991-01-21/1991-01-27 \n", + "1777 36 FR France 1991-01-14/1991-01-20 \n", + "1778 38 FR France 1991-01-07/1991-01-13 \n", + "1779 36 FR France 1990-12-31/1991-01-06 \n", + "1780 45 FR France 1990-12-24/1990-12-30 \n", + "1781 43 FR France 1990-12-17/1990-12-23 \n", + "1782 28 FR France 1990-12-10/1990-12-16 \n", + "1783 5 FR France 1990-12-03/1990-12-09 \n", + "\n", + "[1784 rows x 11 columns]" + ] + }, + "execution_count": 4, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + " def convert_week(year_and_week_int):\n", + " year_and_week_str = str(year_and_week_int)\n", + " year = int(year_and_week_str[:4])\n", + " week = int(year_and_week_str[4:])\n", + " w = isoweek.Week(year, week)\n", + " return pd.Period(w.day(0), 'W')\n", + "\n", + "raw_data['period'] = [convert_week(yw) for yw in raw_data['week']]\n", + "raw_data" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Nous supprimons la colonne week et utilisons period comme nouvel index de notre jeu de données, et trions les données dans l'ordre chronologique avec." + ] + }, + { + "cell_type": "code", + "execution_count": 5, + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "
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indicatorincinc_lowinc_upinc100inc100_lowinc100_upgeo_inseegeo_name
period
1990-12-03/1990-12-097114302610205FRFrance
1990-12-10/1990-12-16711079666015498201228FRFrance
1990-12-17/1990-12-237190801380724353342543FRFrance
1990-12-24/1990-12-307193751329525455342345FRFrance
1990-12-31/1991-01-067155651027120859271836FRFrance
1991-01-07/1991-01-137162771104621508292038FRFrance
1991-01-14/1991-01-207153871048420290271836FRFrance
1991-01-21/1991-01-277791345631126314820FRFrance
1991-01-28/1991-02-03710442654414340181125FRFrance
1991-02-04/1991-02-10710877701314741191226FRFrance
1991-02-11/1991-02-17712337807716597221529FRFrance
1991-02-18/1991-02-24713289881317765231531FRFrance
1991-02-25/1991-03-03713741878018702241533FRFrance
1991-03-04/1991-03-107166431137221914292038FRFrance
1991-03-11/1991-03-177155741118419964271935FRFrance
1991-03-18/1991-03-24710864733114397191325FRFrance
1991-03-25/1991-03-3179567604113093171123FRFrance
1991-04-01/1991-04-07712265768416846221430FRFrance
1991-04-08/1991-04-14713975978118169251832FRFrance
1991-04-15/1991-04-217148571006819646261834FRFrance
1991-04-22/1991-04-28713462887718047241632FRFrance
1991-04-29/1991-05-057213851388228888382551FRFrance
1991-05-06/1991-05-127167391124622232291939FRFrance
1991-05-13/1991-05-197190531274225364342345FRFrance
1991-05-20/1991-05-26714903897520831261636FRFrance
1991-05-27/1991-06-02715452995320951271737FRFrance
1991-06-03/1991-06-09711947767116223211329FRFrance
1991-06-10/1991-06-167161711007122271281739FRFrance
1991-06-17/1991-06-237161691070021638281838FRFrance
1991-06-24/1991-06-307176081130423912312042FRFrance
..............................
2024-07-15/2024-07-2179270630312237141018FRFrance
2024-07-22/2024-07-28770044278973011715FRFrance
2024-07-29/2024-08-0474500221367877410FRFrance
2024-08-05/2024-08-1174399194468547311FRFrance
2024-08-12/2024-08-18719715363406315FRFrance
2024-08-19/2024-08-25725606224498417FRFrance
2024-08-26/2024-09-01716202852955204FRFrance
2024-09-02/2024-09-08722358703600315FRFrance
2024-09-09/2024-09-157916281804102FRFrance
2024-09-16/2024-09-22775101513102FRFrance
2024-09-23/2024-09-297289813334463426FRFrance
2024-09-30/2024-10-06721257253525315FRFrance
2024-10-07/2024-10-13720353813689315FRFrance
2024-10-14/2024-10-207262112463996426FRFrance
2024-10-21/2024-10-27721246413607315FRFrance
2024-10-28/2024-11-03721356763594315FRFrance
2024-11-04/2024-11-107271312164210426FRFrance
2024-11-11/2024-11-17722608633657315FRFrance
2024-11-18/2024-11-24719317263136315FRFrance
2024-11-25/2024-12-0174189145469246210FRFrance
2024-12-02/2024-12-0876077363185239513FRFrance
2024-12-09/2024-12-157736344381028811715FRFrance
2024-12-16/2024-12-2274670223971017311FRFrance
2024-12-23/2024-12-2974356177669367311FRFrance
2024-12-30/2025-01-0576059245196679414FRFrance
2025-01-06/2025-01-1275966275791759414FRFrance
2025-01-13/2025-01-197246211613763426FRFrance
2025-01-20/2025-01-26768954466932410614FRFrance
2025-01-27/2025-02-027208710563118315FRFrance
2025-02-03/2025-02-097372120615381648FRFrance
\n", + "

1784 rows × 9 columns

\n", + "
" + ], + "text/plain": [ + " indicator inc inc_low inc_up inc100 inc100_low \\\n", + "period \n", + "1990-12-03/1990-12-09 7 1143 0 2610 2 0 \n", + "1990-12-10/1990-12-16 7 11079 6660 15498 20 12 \n", + "1990-12-17/1990-12-23 7 19080 13807 24353 34 25 \n", + "1990-12-24/1990-12-30 7 19375 13295 25455 34 23 \n", + "1990-12-31/1991-01-06 7 15565 10271 20859 27 18 \n", + "1991-01-07/1991-01-13 7 16277 11046 21508 29 20 \n", + "1991-01-14/1991-01-20 7 15387 10484 20290 27 18 \n", + "1991-01-21/1991-01-27 7 7913 4563 11263 14 8 \n", + "1991-01-28/1991-02-03 7 10442 6544 14340 18 11 \n", + "1991-02-04/1991-02-10 7 10877 7013 14741 19 12 \n", + "1991-02-11/1991-02-17 7 12337 8077 16597 22 15 \n", + "1991-02-18/1991-02-24 7 13289 8813 17765 23 15 \n", + "1991-02-25/1991-03-03 7 13741 8780 18702 24 15 \n", + "1991-03-04/1991-03-10 7 16643 11372 21914 29 20 \n", + "1991-03-11/1991-03-17 7 15574 11184 19964 27 19 \n", + "1991-03-18/1991-03-24 7 10864 7331 14397 19 13 \n", + "1991-03-25/1991-03-31 7 9567 6041 13093 17 11 \n", + "1991-04-01/1991-04-07 7 12265 7684 16846 22 14 \n", + "1991-04-08/1991-04-14 7 13975 9781 18169 25 18 \n", + "1991-04-15/1991-04-21 7 14857 10068 19646 26 18 \n", + "1991-04-22/1991-04-28 7 13462 8877 18047 24 16 \n", + "1991-04-29/1991-05-05 7 21385 13882 28888 38 25 \n", + "1991-05-06/1991-05-12 7 16739 11246 22232 29 19 \n", + "1991-05-13/1991-05-19 7 19053 12742 25364 34 23 \n", + "1991-05-20/1991-05-26 7 14903 8975 20831 26 16 \n", + "1991-05-27/1991-06-02 7 15452 9953 20951 27 17 \n", + "1991-06-03/1991-06-09 7 11947 7671 16223 21 13 \n", + "1991-06-10/1991-06-16 7 16171 10071 22271 28 17 \n", + "1991-06-17/1991-06-23 7 16169 10700 21638 28 18 \n", + "1991-06-24/1991-06-30 7 17608 11304 23912 31 20 \n", + "... ... ... ... ... ... ... \n", + "2024-07-15/2024-07-21 7 9270 6303 12237 14 10 \n", + "2024-07-22/2024-07-28 7 7004 4278 9730 11 7 \n", + "2024-07-29/2024-08-04 7 4500 2213 6787 7 4 \n", + "2024-08-05/2024-08-11 7 4399 1944 6854 7 3 \n", + "2024-08-12/2024-08-18 7 1971 536 3406 3 1 \n", + "2024-08-19/2024-08-25 7 2560 622 4498 4 1 \n", + "2024-08-26/2024-09-01 7 1620 285 2955 2 0 \n", + "2024-09-02/2024-09-08 7 2235 870 3600 3 1 \n", + "2024-09-09/2024-09-15 7 916 28 1804 1 0 \n", + "2024-09-16/2024-09-22 7 751 0 1513 1 0 \n", + "2024-09-23/2024-09-29 7 2898 1333 4463 4 2 \n", + "2024-09-30/2024-10-06 7 2125 725 3525 3 1 \n", + "2024-10-07/2024-10-13 7 2035 381 3689 3 1 \n", + "2024-10-14/2024-10-20 7 2621 1246 3996 4 2 \n", + "2024-10-21/2024-10-27 7 2124 641 3607 3 1 \n", + "2024-10-28/2024-11-03 7 2135 676 3594 3 1 \n", + "2024-11-04/2024-11-10 7 2713 1216 4210 4 2 \n", + "2024-11-11/2024-11-17 7 2260 863 3657 3 1 \n", + "2024-11-18/2024-11-24 7 1931 726 3136 3 1 \n", + "2024-11-25/2024-12-01 7 4189 1454 6924 6 2 \n", + "2024-12-02/2024-12-08 7 6077 3631 8523 9 5 \n", + "2024-12-09/2024-12-15 7 7363 4438 10288 11 7 \n", + "2024-12-16/2024-12-22 7 4670 2239 7101 7 3 \n", + "2024-12-23/2024-12-29 7 4356 1776 6936 7 3 \n", + "2024-12-30/2025-01-05 7 6059 2451 9667 9 4 \n", + "2025-01-06/2025-01-12 7 5966 2757 9175 9 4 \n", + "2025-01-13/2025-01-19 7 2462 1161 3763 4 2 \n", + "2025-01-20/2025-01-26 7 6895 4466 9324 10 6 \n", + "2025-01-27/2025-02-02 7 2087 1056 3118 3 1 \n", + "2025-02-03/2025-02-09 7 3721 2061 5381 6 4 \n", + "\n", + " inc100_up geo_insee geo_name \n", + "period \n", + "1990-12-03/1990-12-09 5 FR France \n", + "1990-12-10/1990-12-16 28 FR France \n", + "1990-12-17/1990-12-23 43 FR France \n", + "1990-12-24/1990-12-30 45 FR France \n", + "1990-12-31/1991-01-06 36 FR France \n", + "1991-01-07/1991-01-13 38 FR France \n", + "1991-01-14/1991-01-20 36 FR France \n", + "1991-01-21/1991-01-27 20 FR France \n", + "1991-01-28/1991-02-03 25 FR France \n", + "1991-02-04/1991-02-10 26 FR France \n", + "1991-02-11/1991-02-17 29 FR France \n", + "1991-02-18/1991-02-24 31 FR France \n", + "1991-02-25/1991-03-03 33 FR France \n", + "1991-03-04/1991-03-10 38 FR France \n", + "1991-03-11/1991-03-17 35 FR France \n", + "1991-03-18/1991-03-24 25 FR France \n", + "1991-03-25/1991-03-31 23 FR France \n", + "1991-04-01/1991-04-07 30 FR France \n", + "1991-04-08/1991-04-14 32 FR France \n", + "1991-04-15/1991-04-21 34 FR France \n", + "1991-04-22/1991-04-28 32 FR France \n", + "1991-04-29/1991-05-05 51 FR France \n", + "1991-05-06/1991-05-12 39 FR France \n", + "1991-05-13/1991-05-19 45 FR France \n", + "1991-05-20/1991-05-26 36 FR France \n", + "1991-05-27/1991-06-02 37 FR France \n", + "1991-06-03/1991-06-09 29 FR France \n", + "1991-06-10/1991-06-16 39 FR France \n", + "1991-06-17/1991-06-23 38 FR France \n", + "1991-06-24/1991-06-30 42 FR France \n", + "... ... ... ... \n", + "2024-07-15/2024-07-21 18 FR France \n", + "2024-07-22/2024-07-28 15 FR France \n", + "2024-07-29/2024-08-04 10 FR France \n", + "2024-08-05/2024-08-11 11 FR France \n", + "2024-08-12/2024-08-18 5 FR France \n", + "2024-08-19/2024-08-25 7 FR France \n", + "2024-08-26/2024-09-01 4 FR France \n", + "2024-09-02/2024-09-08 5 FR France \n", + "2024-09-09/2024-09-15 2 FR France \n", + "2024-09-16/2024-09-22 2 FR France \n", + "2024-09-23/2024-09-29 6 FR France \n", + "2024-09-30/2024-10-06 5 FR France \n", + "2024-10-07/2024-10-13 5 FR France \n", + "2024-10-14/2024-10-20 6 FR France \n", + "2024-10-21/2024-10-27 5 FR France \n", + "2024-10-28/2024-11-03 5 FR France \n", + "2024-11-04/2024-11-10 6 FR France \n", + "2024-11-11/2024-11-17 5 FR France \n", + "2024-11-18/2024-11-24 5 FR France \n", + "2024-11-25/2024-12-01 10 FR France \n", + "2024-12-02/2024-12-08 13 FR France \n", + "2024-12-09/2024-12-15 15 FR France \n", + "2024-12-16/2024-12-22 11 FR France \n", + "2024-12-23/2024-12-29 11 FR France \n", + "2024-12-30/2025-01-05 14 FR France \n", + "2025-01-06/2025-01-12 14 FR France \n", + "2025-01-13/2025-01-19 6 FR France \n", + "2025-01-20/2025-01-26 14 FR France \n", + "2025-01-27/2025-02-02 5 FR France \n", + "2025-02-03/2025-02-09 8 FR France \n", + "\n", + "[1784 rows x 9 columns]" + ] + }, + "execution_count": 5, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "sorted_data = raw_data.set_index('period').sort_index()\n", + "sorted_data.pop(\"week\")\n", + "sorted_data" + ] + }, + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Nous regroupons les données par an en considérant le début de l'année à la première semaine de Septembre pour limiter au plus les erreurs." + ] + }, + { + "cell_type": "code", + "execution_count": 18, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "2020 221186\n", + "2023 366227\n", + "2021 376290\n", + "2024 479258\n", + "2002 516689\n", + "2018 542312\n", + "2017 551041\n", + "1996 564901\n", + "2019 584066\n", + "2015 604382\n", + "2000 617597\n", + "2001 619041\n", + "2012 624573\n", + "2005 628464\n", + "2006 632833\n", + "2022 641397\n", + "2011 642368\n", + "1993 643387\n", + "1995 652478\n", + "1994 661409\n", + "1998 677775\n", + "1997 683434\n", + "2014 685769\n", + "2013 698332\n", + "2007 717352\n", + "2008 749478\n", + "1999 756456\n", + "2003 758363\n", + "2004 777388\n", + "2016 782114\n", + "2010 829911\n", + "1992 832939\n", + "2009 842373\n", + "dtype: int64" + ] + }, + "execution_count": 18, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "first_september_week = [pd.Period(pd.Timestamp(y, 9, 1), 'W') for y in range(1991, sorted_data.index[-1].year)]\n", + "year = []\n", + "yearly_incidence = []\n", + "for week1, week2 in zip(first_september_week[:-1], first_september_week[1:]):\n", + " one_year = sorted_data['inc'][week1:week2-1]\n", + " assert abs(len(one_year)-52) < 2\n", + " yearly_incidence.append(one_year.sum())\n", + " year.append(week2.year)\n", + "yearly_incidence = pd.Series(data=yearly_incidence, index=year)\n", + "yearly_incidence.sort_values()" + ] + } + ], "metadata": { "kernelspec": { "display_name": "Python 3", @@ -16,10 +3112,9 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.6.3" + "version": "3.6.4" } }, "nbformat": 4, "nbformat_minor": 2 } -