{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Incidence de la varicelle depuis Sentinelle" ] }, { "cell_type": "code", "execution_count": 2, "metadata": {}, "outputs": [], "source": [ "%matplotlib inline\n", "import matplotlib.pyplot as plt\n", "import pandas as pd\n", "import isoweek\n", "import requests\n", "import os\n", "import glob\n", "from datetime import datetime" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "Les données de l'incidence de la varicelle sont disponibles du site Web du [Réseau Sentinelles](http://www.sentiweb.fr/). Nous les récupérons sous forme d'un fichier en format CSV dont chaque ligne correspond à une semaine de la période demandée. Nous téléchargeons toujours le jeu de données complet, qui commence en 1990 et toujours en update regulier." ] }, { "cell_type": "code", "execution_count": 7, "metadata": {}, "outputs": [], "source": [ "data_url = \"http://www.sentiweb.fr/datasets/all/inc-7-PAY.csv\"\n", "local_file_pattern = \"-sentinelle-varicelle.csv\"" ] }, { "cell_type": "code", "execution_count": 17, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "Detected 1 file(s) with pattern -sentinelle-varicelle.csv\n", "Using latest : 20251210--sentinelle-varicelle.csv\n", "! Consider checking latest data for update, keep original file\n" ] }, { "data": { "text/html": [ "
| \n", " | week | \n", "indicator | \n", "inc | \n", "inc_low | \n", "inc_up | \n", "inc100 | \n", "inc100_low | \n", "inc100_up | \n", "geo_insee | \n", "geo_name | \n", "
|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", "202548 | \n", "7 | \n", "5654 | \n", "3398 | \n", "7910 | \n", "8 | \n", "5 | \n", "11 | \n", "FR | \n", "France | \n", "
| 1 | \n", "202547 | \n", "7 | \n", "5184 | \n", "3279 | \n", "7089 | \n", "8 | \n", "5 | \n", "11 | \n", "FR | \n", "France | \n", "
| 2 | \n", "202546 | \n", "7 | \n", "3136 | \n", "1451 | \n", "4821 | \n", "5 | \n", "2 | \n", "8 | \n", "FR | \n", "France | \n", "
| 3 | \n", "202545 | \n", "7 | \n", "4733 | \n", "2070 | \n", "7396 | \n", "7 | \n", "3 | \n", "11 | \n", "FR | \n", "France | \n", "
| 4 | \n", "202544 | \n", "7 | \n", "3461 | \n", "1763 | \n", "5159 | \n", "5 | \n", "2 | \n", "8 | \n", "FR | \n", "France | \n", "