From 821b6f6078c1b22da91a73614bf8004bc0dd9c1e Mon Sep 17 00:00:00 2001 From: Arnaud Legrand Date: Thu, 15 Aug 2019 17:42:58 +0200 Subject: [PATCH] =?UTF-8?q?Premier=20tiers=20de=20la=20s=C3=A9quence=20eff?= =?UTF-8?q?ectu=C3=A9!?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- module4/ressources/docker_tutorial_fr.org | 3802 ++++++++++++--------- 1 file changed, 2203 insertions(+), 1599 deletions(-) diff --git a/module4/ressources/docker_tutorial_fr.org b/module4/ressources/docker_tutorial_fr.org index 057c2a5..e60ff33 100644 --- a/module4/ressources/docker_tutorial_fr.org +++ b/module4/ressources/docker_tutorial_fr.org @@ -6,36 +6,48 @@ #+PROPERTY: header-args :eval never-export -L'objectif, c'est la reproductibilité et l'explicitation des -dépendances. L'intégration continue est un moyen d'y arriver mais je -dirais que notre objectif n'est pas d'en faire des experts de -développement logiciel et de l'intégration continue. - -Ayant peu d'expérience avec Docker, je me suis appuyé sur la -[[https://people.irisa.fr/Anthony.Baire/docker-tutorial.pdf][présentation d'Anthony Baire]] pour préparer cette séquence. * Objectifs et Problématique -** Problématiques: -- Alice a son propre environnemnet, Bob a le sien. Le code/notebook - qu'Alice exécute ne s'exécute pas sur la machine de Bob et +L'objectif de cette séquence est de vous familiariser avec les notions +d'*environnement logiciel*, l'importance du contrôle de cet +environnement, et de vous présenter les outils vous permettant d'y +arriver. En particulier, nous verrons comment utiliser des *conteneurs*, +comment utiliser un système de *gestions de paquets* pour construire un +environnement donné, et même l'outil d'*intégration continue* de gitlab +pour automatiser un test dans un environnement logiciel spécifique. + +Notre objectif n'est pas de faire de vous des experts de chacun de ces +outils mais de vous familiariser avec chacun d'eux et que vous +compreniez leur périmètre afin que vous sachiez contrôler et +expliciter vos dépendances logicielles. + +** Problématique +- Alice a son propre environnement, Bob a le sien. Le code ou le + notebook qu'Alice exécute ne s'exécute pas sur la machine de Bob et réciproquement. - Bob ne peut pas mettre à jour sa machine (pas les droits, risque de casser autre chose, pas le même système d'exploitation, etc.) -- Le code d'Alice s'exécute bien chez Charles mais il ne donne pas - le même résultat. -- Ce code fonctionnait sur d'anciennes versions mais sur des versions - récentes ce n'est plus le cas. +- Étrangement, le code d'Alice s'exécute bien chez Charles mais il ne + donne pas le même résultat. +- Quelques mois plus tard, avant de faire les mises à jour de sa + machine, ce code fonctionnait très bien mais maintenant il ne + fonctionne plus. ** Objectifs -- Savoir travailler dans un conteneur (*Docker*) pour isoler son travail du reste +À l'issue de cette séquence, vous devriez savoir: +- Travailler dans un conteneur (*Docker*) pour isoler son travail du reste de sa machine -- Savoir créer un conteneur pour figer un environnement et le partager +- Créer un conteneur pour figer un environnement et le partager (*Packaging* + *DockerFile*) -- Mettre en place un test pour s'assurer de sa robustesse (*Continuous - Integration*) en déportant son exécution dans des environnements - controllés +- Mettre en place un test pour s'assurer de la robustesse d'un code + (*Continuous Integration*) en déportant son exécution dans des + environnements controllés + +Nous prendrons comme fil rouge l'exécution d'un notebook jupyter mais +nous montrerons les commandes équivalentes pour Rstudio et Org-Mode +mesure. * Table des matières et Progression :TOC: - [[#objectifs-et-problématique][Objectifs et Problématique]] - - [[#problématiques][Problématiques:]] + - [[#problématique][Problématique]] - [[#objectifs][Objectifs]] - [[#séquence-1-familiarisation-avec-le-principe-de-conteneur][Séquence 1: Familiarisation avec le principe de conteneur]] - [[#11-premiers-pas-avec-docker][1.1 Premiers pas avec Docker]] @@ -51,31 +63,611 @@ Ayant peu d'expérience avec Docker, je me suis appuyé sur la - [[#25-mettre-son-image-à-disposition][2.5 Mettre son image à disposition]] - [[#26-limitations][2.6 Limitations]] - [[#27-exemple-de-reconstruction-dun-vieil-environnement-optionnel][2.7 Exemple de reconstruction d'un "vieil" environnement (Optionnel)]] + - [[#28-faire-construire-son-image-par-dockerhub-optionnel][2.8 Faire construire son image par dockerhub (Optionnel)]] - [[#séquence-3-mettre-en-place-un-test-et-utiliser-lintégration-continue-pour-sassurer-de-la-robustesse-dun-code][Séquence 3: Mettre en place un test et utiliser l'intégration continue pour s'assurer de la robustesse d'un code]] - [[#31-exécuter-ce-notebook-dans-un-conteneur-et-mettre-en-place-un-test][3.1 Exécuter ce notebook dans un conteneur et mettre en place un test]] - [[#32-activer-lintégration-continue-pour-que-ce-test-soit-exécuté-à-chaque-commit-dans-le-conteneur-de-notre-choix][3.2 Activer l'intégration continue pour que ce test soit exécuté à chaque commit dans le conteneur de notre choix]] - [[#33-rajouter-un-test-pour-repérer-si-des-environnements-plus-à-jour-cassent-notre-test][3.3 Rajouter un test pour repérer si des environnements plus à jour cassent notre test]] - [[#34-limitations][3.4 Limitations]] -* Séquence 1: Familiarisation avec le principe de conteneur +* TODO Séquence 1: Familiarisation avec le principe de conteneur +#+BEGIN_CENTER +*FIXME*: faire une illustration +#+END_CENTER +Docker va vous permettre d'exécuter des programmes dans ce que l'on +appelle des conteneurs. Un /conteneur/ est une sorte de mini-machine +virtuelle dont le système de fichier est appelé /image/ et qui va +exécuter un /programme/. Je pourrai avoir à un instant donné plusieurs +conteneurs exécutant des programmes différents issus d'images +différentes ou identiques. +- Le premier avantage de cette approche est que votre programme sera + isolé du reste de votre machine et, quoi que vous fassiez dans ce + conteneur, vous n'abimerez pas votre propre machine en installant + des bibliothèques plus anciennes ou plus modernes qui seraient + incompatibles. +- Le second avantage est que vous pourrez préparer plusieurs + conteneurs différents pour vérifier si votre programme fonctionne + toujours bien. +- Enfin, vous pourrez partager ce conteneur avec d'autres de façons à + ce qu'ils puissent exécuter un programme dans les mêmes conditions + que celles que vous aviez prévues. + +Si ça vous parait abstrait, le plus simple est de vous montrer comment +ça fonctionne et que vous reveniez sur cette description un peu plus +tard si besoin. ** 1.1 Premiers pas avec Docker -- S'assurer que docker est bien installé -- Récupérer une image de base -- Exécuter une commande dans un conteneur -- Utiliser docker en interactif (réaliser qu'il n'y a pas d'effet - de bord) -- Partager un répertoire avec un conteneur +*** TODO S'assurer que docker est bien installé + +#+BEGIN_CENTER +*FIXME*: Faire une partie [[https://docs.docker.com/docker-for-windows/][Docker pour Windows]] et Docker pour MacOSX +#+END_CENTER + +Je suis sur une machine linux (une debian) et j'ai donc installé +docker via le paquet =docker.io=. J'ai aussi pris soin de me mettre dans +le groupe docker pour ne pas avoir à passer root à chaque fois. Voici +comment j'ai fait. +#+begin_src shell :results output :exports both :eval never +sudo apt-get install docker.io +sudo adduser alegrand docker +#+end_src + +Je peux alors lancer la commande docker et lui demander de quelle +version il s'agit. +#+begin_src shell :session *shell* :results output :exports both +docker version +#+end_src + +#+RESULTS: +#+begin_example +Client: + Version: 1.13.1 + API version: 1.26 + Go version: go1.9.3 + Git commit: 092cba3 + Built: Thu Feb 1 09:36:44 2018 + OS/Arch: linux/amd64 + +Server: + Version: 1.13.1 + API version: 1.26 (minimum version 1.12) + Go version: go1.9.3 + Git commit: 092cba3 + Built: Thu Feb 1 09:36:44 2018 + OS/Arch: linux/amd64 + Experimental: false +#+end_example + +*** Récupérer une image de base +Nous pouvons commencer. L'idée pour bien contrôler son environnement +va souvent être de partir d'un environnement assez minimaliste et dans +lequel un notebook jupyter n'aura d'ailleurs aucune chance de +s'exécuter. Je partirai d'une image debian stable que je vais +récupérer à l'aide de la commande =docker pull=. + +#+begin_src shell :session *shell* :results output :exports both +docker pull debian:stable +#+end_src + +#+RESULTS: +: stable: Pulling from library/debian +: +: 5893bf6f34bb: Pulling fs layer +: 5893bf6f34bb: Downloading 507kB/50.38MB +: 5893bf6f34bb: Verifying Checksum +: 5893bf6f34bb: Download complete +: 5893bf6f34bb: Extracting 524.3kB/50.38MB +: 5893bf6f34bb: Pull complete +: Digest: sha256:4d28f191a4c9dec569867dd9af1e388c995146057a36d5b3086e599af7c2379b +: Status: Downloaded newer image for debian:stable + +La commande précédente s'est connectée sur le site [[https://hub.docker.com/][DockerHub]] pour y +télécharger une image officielle debian stable. Je peux la trouver +listée ici: https://hub.docker.com/_/debian. Que puis-je savoir sur +cette image ? + +#+begin_src shell :session *shell* :results output :exports both +docker image list +#+end_src + +#+RESULTS: +#+begin_example +REPOSITORY TAG IMAGE ID CREATED SIZE +debian stable 40e13c3c9aab 12 days ago 114MB +#+end_example + +Mon image apparaît. Elle fait 114MB et a été construite il y a 12 +jours. +*** Exécuter une commande dans un conteneur +Grâce à la commande =docker run=, je vais pouvoir exécuter des commandes +dans le conteneur que je viens de télécharger. Par exemple, comme +ceci: +#+begin_src shell :session *shell* :results output :exports both +docker run debian:stable ls +#+end_src + +#+RESULTS: +#+begin_example +bin +boot +dev +etc +home +lib +lib64 +media +mnt +opt +proc +root +run +sbin +srv +sys +tmp +usr +var +#+end_example + +Bon, ok, ce n'est pas très impressionnant mais croyez moi, le =ls= a +listé ce qu'il y avait dans le conteneur, pas ce qu'il y avait sur mon +propre système de fichier. Pour preuve, quand je lance cette commande +sans docker, je trouve les fichiers =initrd.img=, =exports=, et =nix= en plus: +#+begin_src shell :results output :exports both +ls / +#+end_src + +#+RESULTS: +#+begin_example +bin +boot +dev +etc +exports +home +initrd.img +initrd.img.old +lib +lib32 +lib64 +lost+found +media +mnt +nix +opt +proc +root +run +sbin +srv +sys +tmp +usr +var +vmlinuz +vmlinuz.old +#+end_example + +Essayons avec la commande =hostname= qui me renverra comment s'appelle +la machine. +#+begin_src shell :session *shell* :results output :exports both +docker run debian:stable hostname +#+end_src + +#+RESULTS: +: 07193bfee89f + +Ah, oui, c'est assez différent de ce que j'obtiens quand je lance +cette commande directement sur ma machine: +#+begin_src shell :session *shell* :results output :exports both +hostname +#+end_src + +#+RESULTS: +: icarus + +Continuons de comparer. Est-ce que l'on trouve python, python3 ou perl +dans cet environnement ? +#+begin_src shell :session *shell* :results output :exports both +echo "=== On my machine ===" +which -a python3 python perl # chez moi oui +echo "=== On debian:stable ===" +docker run debian:stable which -a python3 python perl # mais pas dans cet environnement +echo "====================" +#+end_src + +#+RESULTS: +#+begin_example +=== On my machine === +/usr/bin/X11//python3 +/usr/bin/X11//python3 +/usr/bin/python3 +/usr/bin/X11//python +/usr/bin/X11//python +/usr/bin/python +/usr/bin/X11//perl +/usr/bin/X11//perl +/usr/bin/perl +=== On debian:stable === +/usr/bin/perl +==================== +#+end_example + +Non, pas de python dans cette image debian minimaliste, seulement +perl. En fait, à chaque fois que je lance une commande avec =docker +run=, c'est un peu comme si un mini-système d'exploitation démarrait, +exécutait cette commande et s'éteignait... C'est donc un peu coûteux +et pénible d'avoir à toujours préfixer par =docker run=, donc une +solution simple consiste à lancer docker en mode interactif. +*** Utiliser docker en interactif +À partir de maintenant, il vous faudra bien faire attention à +distinguer les commandes qui sont lancées sur mon système de base de +celles qui sont lancées dans notre conteneur docker. Rentrons dans +notre conteneur en interactif +#+begin_src shell :session *docker* :results output :exports both +docker run -t -i debian:stable +#+end_src + +#+RESULTS: + +Je peux alors exécuter plusieurs séries de commandes facilement dans +mon environnement: +#+begin_src shell :session *docker* :results output :exports both +hostname; whoami ; python ; +ls -la ~/ +#+end_src + +#+RESULTS: +#+begin_example +hostname; whoami ; python ; +aa68f9214de3 +root +bash: python: command not found +ls -la ~/ +total 16 +drwx------ 2 root root 4096 Jul 8 03:30 . +drwxr-xr-x 1 root root 4096 Aug 15 09:36 .. +-rw-r--r-- 1 root root 570 Jan 31 2010 .bashrc +-rw-r--r-- 1 root root 148 Aug 17 2015 .profile +#+end_example + +Je suis =root= dans cet environnement, ce qui me permettra d'y installer +tous les logiciels que je souhaite. Mais nous verrons ça plus tard, +je vais d'abord illustrer un point lié aux effets de bords. Je vais +créer un fichier +#+begin_src shell :session *docker* :results output :exports both +echo "Hello world!" > ~/myfile.txt +ls -la ~/ +#+end_src + +#+RESULTS: +: +: ~/myfile.txt +: ls -la ~/ +: total 20 +: drwx------ 1 root root 4096 Aug 15 09:41 . +: drwxr-xr-x 1 root root 4096 Aug 15 09:36 .. +: -rw-r--r-- 1 root root 570 Jan 31 2010 .bashrc +: -rw-r--r-- 1 root root 148 Aug 17 2015 .profile +: -rw-r--r-- 1 root root 13 Aug 15 09:41 myfile.txt + +J'ai bien créé un fichier dans le répertoire personnel de +l'utilisateur =root= de cet environnement. Je vais maintenant quitter +cet environnement, le redémarrer et y relancer les commandes +précédentes: +#+begin_src shell :session *docker* :results output :exports both +exit +#+end_src + +#+RESULTS: +: exit + +#+begin_src shell :session *docker* :results output :exports both +docker run -t -i debian:stable +#+end_src + +#+RESULTS: + +#+begin_src shell :session *docker* :results output :exports both +hostname; whoami ; python ; +ls -la ~/ +exit +#+end_src + +#+RESULTS: +#+begin_example +hostname; whoami ; python ; +f8705ae9aeff +root +bash: python: command not found +ls -la ~/ +total 16 +drwx------ 2 root root 4096 Jul 8 03:30 . +drwxr-xr-x 1 root root 4096 Aug 15 09:44 .. +-rw-r--r-- 1 root root 570 Jan 31 2010 .bashrc +-rw-r--r-- 1 root root 148 Aug 17 2015 .profile +exit +exit +#+end_example + +Je suis toujours l'utilisateur =root= mais vous remarquerez que le nom +de la machine a changé (=f8705ae9aeff= au lieu de =aa68f9214de3=) et que +le fichier =myfile.txt= a disparu. + +En fait lorsque je ferme un conteneur, toutes les modifications que +j'aurais pu y apporter sont perdues ou plutôt dès que je lance un +conteneur, il s'agit d'un conteneur vierge des modifications que +j'aurais pu faire auparavant. Mon conteneur est donc isolé du reste de +la machine et est "sans mémoire". Même si je fais une erreur et que +j'efface tout le contenu de mon conteneur, je peux toujours +recommencer du début et récupérer un environnement tout neuf. C'est +cette propriété d'immutabilité qui va nous permettre de nous assurer +que le code que j'exécuterai dans 3 mois s'exécutera dans les mêmes +conditions logicielles que le code que j'exécute aujourd'hui. + +Mais alors comment faire pour récupérer les fichiers et les résultats +d'un calcul exécuté dans un conteneur ? + +*** TODO Partager un répertoire avec un conteneur +#+BEGIN_CENTER +*FIXME*: Évoquer le problème des uid à la fin ? +#+END_CENTER + +Le conteneur étant isolé de l'extérieur (sauf via le réseau) et ayant +son propre système de fichier, le plus simple pour échanger des +données avec l'extérieur consiste à partager un répertoire entre le +conteneur et la machine hôte. + +Je peux par exemple partager le répertoire courant dans le répertoire +=/tmp= du conteneur. + +#+begin_src shell :session *shell* :results output :exports both +echo "-- Sans partage" +docker run debian:stable ls /tmp +#+end_src + +#+RESULTS: +: -- Sans partage + +#+begin_src shell :session *shell* :results output :exports both +echo "-- Avec partage de" `pwd` +docker run --volume=`pwd`:/tmp debian:stable ls /tmp +#+end_src + +#+RESULTS: +#+begin_example +-- Avec partage de /home/alegrand/Work/Documents/Enseignements/RR_MOOC/gitlab-inria/mooc-rr-ressources/module4/ressources +Makefile +docker_tutorial_fr.html +docker_tutorial_fr.html~ +docker_tutorial_fr.org +docker_tutorial_fr.org~ +exo1.org +exo2.org +exo3.org +mooc_docker +mooc_docker_image +mooc_docker_image_oldoldstable +resources_environment.org +resources_environment_fr.org +resources_refs.org +resources_refs_fr.org +test_jupyter +#+end_example + +Ainsi, plutôt que d'aller dans le répertoire =my_work/= pour y +travailler sans bien contrôler dans quel environnement je travaille, +je vais lancer un conteneur à l'environnement logiciel contrôlé et à +qui j'aurai donné accès au répertoire =my_work/=. Je travaillerai alors +normalement à ceci près que je lancerai toutes mes commandes dans mon +conteneur docker. Le résultat de mes commandes sera disponible comme +d'habitude dans le répertoire =my_work/=. + +Mettons cela en pratique avec un environnement un peu plus fourni +qu'une debian minimaliste. ** 1.2(A) Utiliser docker pour travailler au jour le jour: Jupyter -- (Exécuter un notebook dans un environnement sans interaction) +Tout un tas d'organisation mettent donc à disposition des images +docker à jour permettant de travailler au mieux. C'est le cas de +jupyter qui fourni plusieurs images. Voyons ce qui est à notre disposition: + +#+begin_src shell :results output :exports both +docker search jupyter +#+end_src + +#+RESULTS: +#+begin_example +NAME DESCRIPTION STARS OFFICIAL AUTOMATED +jupyter/datascience-notebook Jupyter Notebook Data Science Stack from h... 525 +jupyter/all-spark-notebook Jupyter Notebook Python, Scala, R, Spark, ... 243 +jupyterhub/jupyterhub JupyterHub: multi-user Jupyter notebook se... 216 [OK] +jupyter/scipy-notebook Jupyter Notebook Scientific Python Stack f... 180 +jupyter/tensorflow-notebook Jupyter Notebook Scientific Python Stack w... 160 +jupyter/pyspark-notebook Jupyter Notebook Python, Spark, Mesos Stac... 110 +jupyter/minimal-notebook Minimal Jupyter Notebook Stack from https:... 79 +jupyter/base-notebook Small base image for Jupyter Notebook stac... 72 +jupyter/r-notebook Jupyter Notebook R Stack from https://gith... 24 +jupyterhub/singleuser single-user docker images for use with Jup... 23 [OK] +jupyter/nbviewer Jupyter Notebook Viewer 17 [OK] +mikebirdgeneau/jupyterlab Jupyterlab based on python / alpine linux ... 16 [OK] +jupyter/demo (DEPRECATED) Demo of the IPython/Jupyter N... 14 +eboraas/jupyter Jupyter Notebook (aka IPython Notebook) wi... 12 [OK] +jupyterhub/k8s-hub 9 +jupyterhub/configurable-http-proxy node-http-proxy + REST API 5 [OK] +jupyterhub/jupyterhub-onbuild onbuild version of JupyterHub images 2 +takaomag/jupyter.notebook docker image of archlinux (jupyter.noteboo... 2 [OK] +jupyter/repo2docker Turn git repositories into Jupyter enabled... 2 +minrk/jupyterhub-onbuild onbuild jupyterhub images 1 [OK] +maxmtmn/jupyter-notebook-custom example how to build jupyter notebook with... 1 [OK] +jupyterhub/k8s-network-tools 1 +stanfordlegion/jupyter-regent Regent kernel for Jupyter 1 [OK] +guangie88/jupyter-pyspark-toree-addon Python dependencies to install over jupyte... 0 +idahlke/jupyter Ian's flavor of jupyter 0 +#+end_example + +Les premières =jupyter/*= sont des images "officielles" de l'équipe de +développement de Jupyter. Vous trouvez également tout un tas d'images +faites par des gens comme vous et moi. Vous trouverez un peu plus de +détail sur les images officielles jupyter dans la [[https://jupyter-docker-stacks.readthedocs.io/en/latest/using/selecting.html][documentation +correspondante]]. La plus petite image disponible permettant d'exécuter +un notebook s'appelle [[https://hub.docker.com/r/jupyter/base-notebook/][base-notebook]]. Elle pèse environ 200M mais elle +ne dispose pas de bibliothèques de calcul scientifique comme =pandas=, +=numpy=, =matplotlib= ou =statsmodels=. Pour ça, il faudra utiliser l'image +[[https://hub.docker.com/r/jupyter/scipy-notebook/][scipy-notebook]] qui vient avec tout le nécessaire et même pas mal de +superflu (elle pèse 1G...). S'il vous en faut plus, n'hésitez pas à +parcourir https://hub.docker.com/jupyter et la [[https://jupyter-docker-stacks.readthedocs.io/][documentation de ces +image]]. + +Préparez-vous à ce que l'exécution de la commande qui suit prenne donc +un peu de temps puisqu'elle commencera par rappatrier la dernière +image de =jupyter/scipy-notebook= avant de l'exécuter. +#+begin_src shell :results output :exports both +docker run -p 8888:8888 jupyter/scipy-notebook +#+end_src + +#+RESULTS: +#+begin_example +Executing the command: jupyter notebook +[I 10:13:54.544 NotebookApp] Writing notebook server cookie secret to /home/jovyan/.local/share/jupyter/runtime/notebook_cookie_secret +[I 10:13:54.746 NotebookApp] JupyterLab extension loaded from /opt/conda/lib/python3.7/site-packages/jupyterlab +[I 10:13:54.746 NotebookApp] JupyterLab application directory is /opt/conda/share/jupyter/lab +[I 10:13:54.748 NotebookApp] Serving notebooks from local directory: /home/jovyan +[I 10:13:54.748 NotebookApp] The Jupyter Notebook is running at: +[I 10:13:54.748 NotebookApp] http://b81d06d52acd:8888/?token=cd646696a5adde86ca4cc74b18642010e315e3500c8cc63f +[I 10:13:54.748 NotebookApp] or http://127.0.0.1:8888/?token=cd646696a5adde86ca4cc74b18642010e315e3500c8cc63f +[I 10:13:54.748 NotebookApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation). +[C 10:13:54.751 NotebookApp] + + To access the notebook, open this file in a browser: + file:///home/jovyan/.local/share/jupyter/runtime/nbserver-8-open.html + Or copy and paste one of these URLs: + http://b81d06d52acd:8888/?token=cd646696a5adde86ca4cc74b18642010e315e3500c8cc63f + or http://127.0.0.1:8888/?token=cd646696a5adde86ca4cc74b18642010e315e3500c8cc63f +#+end_example + +Si vous prenez votre navigateur et que vous ouvrez la _dernière_ URL +indiquée +(=http://127.0.0.1:8888/?token=cd646696a5adde86ca4cc74b18642010e315e3500c8cc63f= +dans le cas présent) vous verrez que vous avez alors accès à un +notebook jupyter tout beau tout neuf sans rien avoir eu à installer +qui puisse perturber votre machine. + +Comment ça marche ? Par défaut, le serveur jupyter s'ouvre sur le port +8888 et il vous indique donc que si vous vous connectez à l'adresse +=http://127.0.0.1:8888=, vous y trouverez le seveur jupyter que vous +venez de lancer. Mais ce serveur est dans votre docker et vous n'y +avez pas accès. le =-p 8888:8888= permet de lier le port 8888 de votre +propre machine au port 8888 du conteneur. + +Fermons le et relançons le en activant la nouvelle interface de +jupyter: JupyterLab. +#+begin_src shell :results output :exports both +docker run -p 8888:8888 -e JUPYTER_ENABLE_LAB=yes jupyter/scipy-notebook # from the doc +#+end_src + +Dans cette interface, vous avez accès d'un seul coup d'oeil au +navigateur de fichiers, au notebooks, au terminaux, etc... + +Vous pouvez bien sûr y importer les fichiers et les données dont vous +auriez besoin mais le plus simple pour travailler confortablement est +de partager un répertoire. Comme vous avez pu le remarquer, dans cette +image docker, c'est un utilisateur =jovyan= qui est créé et il dispose +d'un répertoire =work/= vide dans son répertoire personnel. + +C'est ce répertoire =/home/jovyan/work/= que nous allons utiliser mais +cette fois-ci attention aux effets de bords, vos modifications seront +faites directement dans votre répertoire. Mais s'il est sous git +(attention à éviter de ne partager qu'un sous-répertoire d'un git), +vous ne risquez rien... Bref, la commande magique à utiliser au +quotidien devrait être quelque chose du genre: + +#+begin_src shell :session *shell* :results output :exports both +# First cd into your working directory, then +docker run --volume=`pwd`:/home/jovyan/work/ -p 8888:8888 -e JUPYTER_ENABLE_LAB=yes jupyter/scipy-notebook +#+end_src + +#+RESULTS: +#+begin_example +Executing the command: jupyter lab +[I 10:37:40.275 LabApp] Writing notebook server cookie secret to /home/jovyan/.local/share/jupyter/runtime/notebook_cookie_secret +[I 10:37:40.484 LabApp] JupyterLab extension loaded from /opt/conda/lib/python3.7/site-packages/jupyterlab +[I 10:37:40.485 LabApp] JupyterLab application directory is /opt/conda/share/jupyter/lab +[I 10:37:40.486 LabApp] Serving notebooks from local directory: /home/jovyan +[I 10:37:40.486 LabApp] The Jupyter Notebook is running at: +[I 10:37:40.486 LabApp] http://077a9a5c655f:8888/?token=1c08b68de88811250287057429a429885aa5853ff2cf6c44 +[I 10:37:40.487 LabApp] or http://127.0.0.1:8888/?token=1c08b68de88811250287057429a429885aa5853ff2cf6c44 +[I 10:37:40.487 LabApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation). +[C 10:37:40.490 LabApp] + + To access the notebook, open this file in a browser: + file:///home/jovyan/.local/share/jupyter/runtime/nbserver-8-open.html + Or copy and paste one of these URLs: + http://077a9a5c655f:8888/?token=1c08b68de88811250287057429a429885aa5853ff2cf6c44 + or http://127.0.0.1:8888/?token=1c08b68de88811250287057429a429885aa5853ff2cf6c44 +#+end_example + +J'attire votre attention sur un dernier point. J'ai préparé ce +tutoriel, dans le courant de l'été 2019. J'ai récupéré la dernière +image de =jupyter/scipy-notebook= et il est donc probable que quand vous +exécuterez ces commandes vous même, vous récupériez une image +différente... Et oui, si vous ne précisez rien du tout, vous récupérez +par défaut la dernière image disponible. Celle que j'ai récupérée est +la =844815ed865e= (cet identifiant est le début d'une clé +cryptographique identifiant tout le contenu de cette image). + +#+begin_src shell :results output :exports both +docker image list | grep scipy +#+end_src + +#+RESULTS: +: jupyter/scipy-notebook latest 844815ed865e 4 days ago 3.47GB + +Il possible d'accéder à d'anciennes versions en regardant par exemple +ici: https://hub.docker.com/r/jupyter/scipy-notebook/tags/?page=10. Je +peux ainsi lancer cette image telle qu'elle a été construite il y a 3 ans: + +#+begin_src shell :results output :exports both +docker run -p 8888:8888 jupyter/scipy-notebook:dc6ae8bd8209 # a 3 years old image +#+end_src + +On y trouve d'anciennes versions de =pandas=, =numpy=, =matplotlib= ou +=statsmodels= mais ce n'est pas décrit. Vous pouvez accéder à la recette +de construction, mais vous verrez que plusieurs technologies de +gestion de paquets ont été utilisées (ubuntu et conda), ce qui ne +simplifie pas l'identification exacte des versions de chacun des +paquets utilisés. Si je peux facilement accéder à d'anciennes images, +il va souvent être difficile de savoir ce qu'elles contiennent +exactement, comment elles ont été construites et comment en faire une +variation. ** 1.2(B) Utiliser docker pour travailler au jour le jour: Rstudio ** 1.2(C) Utiliser docker pour travailler au jour le jour: Emacs ** 1.3 Limitations -- Instabilité de cet environnement (latest vs. un plus vieux) -- Que contient-il vraiment ? -- Besoin de choses en plus ? en moins ? -- Perméabilité si vous installez des choses dans cet - environnement (à moins de le figer) -- Bonne pratique: repérer le tag et bien le préciser +Utiliser un conteneur est donc assez facile et très pratique car cela +vous permet de travailler en isolation de votre machine et d'utiliser +à peu près n'importe quel logiciel et ce quel que soit votre système +d'exploitation. Il est aussi très facile de partager ces +environnements avec d'autres via le DockerHub. Néanmoins cette +facilité vient avec quelques contreparties en terme de transparence +et de reproductibilité par un tiers: + +- L'environnement que vous récupérez est en général le plus récent et + donc, à moins que vous ne précisiez exactement via son ID quel + environnement vous utilisez, des collègues qui referaient la même + manipulation que vous quelques jours plus tard risquent de récupérer + un environnement différent du votre. +- Vous récupérez un environnement sans savoir vraiment ce qu'il + contient en terme de logiciels. Quelles versions ? Comment ces + logiciels ont-ils été installés ? Y a-t-il vraiment tout ce dont + vous avez besoin ? N'y a-t-il pas trop de choses par rapport à vos + besoins ? +- Alors bien sûr, puisque votre environnement a accès à Internet, rien + de vous empêche d'y installer ce qui vous manquerait mais dans ce + cas, d'un jour sur l'autre, vous prenez le risque de réinstaller des + choses différentes et, même si vos collègues sont partis de la même + image, ils ne sauront pas où vous en êtes en terme de mises à jour. + +Dans la deuxième séquence, nous verrons donc comment créer votre +propre environnement et le partager avec d'autres. Mais dans tous les +cas, une bonne pratique consiste à bien repérer l'identifiant de vos +images et à les spécifier. * Séquence 2: Créer son propre environnement, automatiser sa construction et le partage ** 2.1 Récupérer une image de base ** 2.2 Installer tous les paquets dont on a besoin @@ -92,6 +684,12 @@ Ayant peu d'expérience avec Docker, je me suis appuyé sur la quelqu'un d'autre de facilement en faire une variation ** 2.7 Exemple de reconstruction d'un "vieil" environnement (Optionnel) (tel qu'on aurait pu le faire il y a un an et demi/deux ans) +** 2.8 Faire construire son image par dockerhub (Optionnel) +https://docs.docker.com/docker-hub/builds/ + +Avantage: garantie de traçabilité et que l'image a bien été construite +de cette façon. + * Séquence 3: Mettre en place un test et utiliser l'intégration continue pour s'assurer de la robustesse d'un code Point de départ: un notebook ** 3.1 Exécuter ce notebook dans un conteneur et mettre en place un test @@ -140,7 +738,7 @@ Connecting to gitlab.inria.fr (gitlab.inria.fr)|128.93.193.8|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 41019 (40K) [text/plain] Saving to: 'notebook.ipynb' -[ ] 0 --.-KB/s notebook.ipynb 100%[===================>] 40.06K --.-KB/s in 0.09s +[ ] 0 --.-KB/s notebook.ipynb 100%[===================>] 40.06K --.-KB/s in 0.09s 2019-07-23 09:19:25 (448 KB/s) - 'notebook.ipynb' saved [41019/41019] --2019-07-23 09:19:25-- https://gitlab.inria.fr/learninglab/mooc-rr/mooc-rr-modele/raw/master/module2/exo5/shuttle.csv?inline=false @@ -149,7 +747,7 @@ Connecting to gitlab.inria.fr (gitlab.inria.fr)|128.93.193.8|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 485 [text/plain] Saving to: 'shuttle.csv' -[ ] 0 --.-KB/s shuttle.csv 100%[===================>] 485 --.-KB/s in 0s +[ ] 0 --.-KB/s shuttle.csv 100%[===================>] 485 --.-KB/s in 0s 2019-07-23 09:19:25 (4.23 MB/s) - 'shuttle.csv' saved [485/485] #+end_example @@ -458,9 +1056,9 @@ python #+end_src #+RESULTS: -: hostname +: hostname : dca997abf7cc -: python +: python : bash: python: command not found Mmh, et bien installons python du coup. @@ -471,7 +1069,7 @@ apt-get install -y python3 #+end_src #+RESULTS: -: whoami +: whoami : root : apt-get update : Get:1 http://cdn-fastly.deb.debian.org/debian stable InRelease [118 kB] @@ -623,7 +1221,7 @@ python3 --version #+RESULTS: : ls -l /usr/bin/X11//python3 : python3.7 -: python3 --version +: python3 --version : Python 3.7.3 Au passage, on peut vérifier que ce n'est pas le même que celui qui est @@ -646,7 +1244,7 @@ apt-get install -y jupyter-nbconvert python3-ipykernel python3-matplotlib python #+RESULTS: #+BEGIN_EXAMPLE -apt-get install -y jupyter-nbconvert python3-ipykernel python3-matplotlib python3-pandas python3-numpy python3-statsmodels +apt-get install -y jupyter-nbconvert python3-ipykernel python3-matplotlib python3-pandas python3-numpy python3-statsmodels 0 upgraded, 247 newly installed, 0 to remove and 0 not upgraded. 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javascript-common (11) ... -Setting up liblcms2-2:amd64 (2.9-3) ... -Setting up lsb-base (10.2019051400) ... -Setting up libxau6:amd64 (1:1.0.8-1+b2) ... -Setting up libkeyutils1:amd64 (1.6-6) ... -Setting up libapparmor1:amd64 (2.13.2-10) ... -Setting up ttf-bitstream-vera (1.10-8) ... -Setting up libsodium23:amd64 (1.0.17-1) ... -Setting up libgpm2:amd64 (1.20.7-5) ... -Setting up mime-support (3.62) ... -Setting up libgslcblas0:amd64 (2.5+dfsg-6) ... -Setting up xdg-user-dirs (0.17-2) ... -Setting up libmagic-mgc (1:5.35-4) ... -Setting up psmisc (23.2-1) ... -Setting up libyaml-0-2:amd64 (0.2.1-1) ... -Setting up libglib2.0-0:amd64 (2.58.3-2) ... -No schema files found: doing nothing. -Setting up manpages (4.16-2) ... -Setting up fonts-lyx (2.3.2-1) ... -Setting up libprocps7:amd64 (2:3.3.15-2) ... -Setting up libsqlite3-0:amd64 (3.27.2-3) ... -Setting up libsasl2-modules:amd64 (2.1.27+dfsg-1) ... -Setting up libnorm1:amd64 (1.5.8+dfsg2-1) ... -Setting up binutils-common:amd64 (2.31.1-16) ... -Setting up x11-common (1:7.7+19) ... -debconf: unable to initialize frontend: Dialog -debconf: (TERM is not set, so the dialog frontend is not usable.) -debconf: falling back to frontend: Readline -update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults -invoke-rc.d: could not determine current runlevel -invoke-rc.d: policy-rc.d denied execution of start. -Setting up libmagic1:amd64 (1:5.35-4) ... -Setting up linux-libc-dev:amd64 (4.19.37-5+deb10u1) ... -Setting up liblzo2-2:amd64 (2.10-0.1) ... -Setting up libnpth0:amd64 (1.6-1) ... -Setting up krb5-locales (1.17-3) ... -Setting up libmetis5:amd64 (5.1.0.dfsg-5+b2) ... -Setting up file (1:5.35-4) ... -Setting up libassuan0:amd64 (2.5.2-1) ... -Setting up libgomp1:amd64 (8.3.0-6) ... -Setting up bzip2 (1.0.6-9.1) ... -Setting up libldap-common (2.4.47+dfsg-3) ... -Setting up libjbig0:amd64 (2.1-3.1+b2) ... -Setting up libaec0:amd64 (1.0.2-1) ... -Setting up libicu63:amd64 (63.1-6) ... -Setting up libfakeroot:amd64 (1.23-1) ... -Setting up libsnappy1v5:amd64 (1.1.7-1) ... -Setting up libkrb5support0:amd64 (1.17-3) ... -Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1) ... -Setting up fakeroot (1.23-1) ... -update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode -Setting up libasan5:amd64 (8.3.0-6) ... -Setting up libglib2.0-data (2.58.3-2) ... -Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+b1) ... -Setting up libx11-data (2:1.6.7-1) ... -Setting up make (4.2.1-1.2) ... -Setting up libmpfr6:amd64 (4.0.2-1) ... -Setting up gnupg-l10n (2.2.12-1) ... -Setting up libgsl23:amd64 (2.5+dfsg-6) ... -Setting up libncurses6:amd64 (6.1+20181013-2) ... -Setting up libdbus-1-3:amd64 (1.12.16-1) ... -Setting up dbus (1.12.16-1) ... -invoke-rc.d: could not determine current runlevel -invoke-rc.d: policy-rc.d denied execution of start. -Setting up xz-utils (5.2.4-1) ... -update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode -Setting up libquadmath0:amd64 (8.3.0-6) ... -Setting up libimagequant0:amd64 (2.12.2-1.1) ... -Setting up libpng16-16:amd64 (1.6.36-6) ... -Setting up libmpc3:amd64 (1.1.0-1) ... -Setting up libatomic1:amd64 (8.3.0-6) ... -Setting up patch (2.7.6-3) ... -Setting up libtcl8.6:amd64 (8.6.9+dfsg-2) ... -Setting up libwebp6:amd64 (0.6.1-2) ... -Setting up libk5crypto3:amd64 (1.17-3) ... -Setting up libltdl7:amd64 (2.4.6-9) ... -Setting up libfftw3-double3:amd64 (3.3.8-2) ... -Setting up libsasl2-2:amd64 (2.1.27+dfsg-1) ... -Setting up libgfortran5:amd64 (8.3.0-6) ... -Setting up libmpx2:amd64 (8.3.0-6) ... -Setting up libubsan1:amd64 (8.3.0-6) ... -Setting up libisl19:amd64 (0.20-2) ... -Setting up sensible-utils (0.0.12) ... -Setting up procps (2:3.3.15-2) ... -update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode -Setting up liblua5.1-0:amd64 (5.1.5-8.1+b2) ... -Setting up libblosc1 (1.15.1+ds1-1) ... -Setting up libgirepository-1.0-1:amd64 (1.58.3-2) ... -Setting up netbase (5.6) ... -Setting up libkrb5-3:amd64 (1.17-3) ... -Setting up libtiff5:amd64 (4.0.10-4) ... -Setting up libmpdec2:amd64 (2.4.2-2) ... -Setting up pandoc-data (2.2.1-3) ... -Setting up libjs-jquery (3.3.1~dfsg-3) ... -Setting up libbinutils:amd64 (2.31.1-16) ... -Setting up cpp-8 (8.3.0-6) ... -Setting up libc-dev-bin (2.28-10) ... -Setting up python-matplotlib-data (3.0.2-2) ... -Setting up openssl (1.1.1c-1) ... -Setting up libwebpmux3:amd64 (0.6.1-2) ... -Setting up libbsd0:amd64 (0.9.1-2) ... -Setting up readline-common (7.0-5) ... -Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... -Setting up python-tables-data (3.4.4-2) ... -Setting up libsuitesparseconfig5:amd64 (1:5.4.0+dfsg-1) ... -Setting up libcc1-0:amd64 (8.3.0-6) ... -Setting up liblocale-gettext-perl (1.07-3+b4) ... -Setting up liblsan0:amd64 (8.3.0-6) ... -Setting up libsz2:amd64 (1.0.2-1) ... -Setting up libitm1:amd64 (8.3.0-6) ... -Setting up libreadline7:amd64 (7.0-5) ... -Setting up libpgm-5.2-0:amd64 (5.2.122~dfsg-3) ... -Setting up libgdbm6:amd64 (1.18.1-4) ... -Setting up gnupg-utils (2.2.12-1) ... -Setting up binutils-x86-64-linux-gnu (2.31.1-16) ... -Setting up libtsan0:amd64 (8.3.0-6) ... -Setting up pinentry-curses (1.1.0-2) ... -Setting up libamd2:amd64 (1:5.4.0+dfsg-1) ... -Setting up manpages-dev (4.16-2) ... -Setting up libxdmcp6:amd64 (1:1.1.2-3) ... -Setting up libpython3.7-stdlib:amd64 (3.7.3-2) ... -Setting up libxcb1:amd64 (1.13.1-2) ... -Setting up libcolamd2:amd64 (1:5.4.0+dfsg-1) ... -Setting up libpython3.7:amd64 (3.7.3-2) ... -Setting up libwebpdemux2:amd64 (0.6.1-2) ... -Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3) ... -Setting up binutils (2.31.1-16) ... -Setting up ca-certificates (20190110) ... -debconf: unable to initialize frontend: Dialog -debconf: (TERM is not set, so the dialog frontend is not usable.) -debconf: falling back to frontend: Readline -Updating certificates in /etc/ssl/certs... -128 added, 0 removed; done. -Setting up libcamd2:amd64 (1:5.4.0+dfsg-1) ... -Setting up libblas3:amd64 (3.8.0-2) ... -update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode -Setting up libjs-jquery-ui (1.12.1+dfsg-5) ... -Setting up pandoc (2.2.1-3+b2) ... -Setting up libfreetype6:amd64 (2.9.1-3) ... -Setting up libglpk40:amd64 (4.65-2) ... -Setting up libhdf5-103:amd64 (1.10.4+repack-10) ... -Setting up shared-mime-info (1.10-1) ... -Setting up libgssapi-krb5-2:amd64 (1.17-3) ... -Setting up libgdbm-compat4:amd64 (1.18.1-4) ... -Setting up ucf (3.0038+nmu1) ... -debconf: unable to initialize frontend: Dialog -debconf: (TERM is not set, so the dialog frontend is not usable.) -debconf: falling back to frontend: Readline -Setting up gir1.2-glib-2.0:amd64 (1.58.3-2) ... -Setting up libgcc-8-dev:amd64 (8.3.0-6) ... -Setting up libperl5.28:amd64 (5.28.1-6) ... -Setting up libccolamd2:amd64 (1:5.4.0+dfsg-1) ... -Setting up cpp (4:8.3.0-1) ... -Setting up libxslt1.1:amd64 (1.1.32-2) ... -Setting up gpgconf (2.2.12-1) ... -Setting up libc6-dev:amd64 (2.28-10) ... -Setting up libx11-6:amd64 (2:1.6.7-1) ... -Setting up python-pip-whl (18.1-5) ... -Setting up gpg (2.2.12-1) ... -Setting up libpython3-stdlib:amd64 (3.7.3-1) ... -Setting up libstdc++-8-dev:amd64 (8.3.0-6) ... -Setting up python3.7 (3.7.3-2) ... -Setting up liblapack3:amd64 (3.8.0-2) ... -update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode -Setting up gcc-8 (8.3.0-6) ... -Setting up gpg-agent (2.2.12-1) ... -Setting up libzmq5:amd64 (4.3.1-4+deb10u1) ... -Setting up libxrender1:amd64 (1:0.9.10-1) ... -Setting up fontconfig-config (2.13.1-2) ... -debconf: unable to initialize frontend: Dialog -debconf: (TERM is not set, so the dialog frontend is not usable.) -debconf: falling back to frontend: Readline -Setting up gpgsm (2.2.12-1) ... -Setting up libxext6:amd64 (2:1.3.3-1+b2) ... -Setting up python3 (3.7.3-1) ... -running python rtupdate hooks for python3.7... -running python post-rtupdate hooks for python3.7... -Setting up python3-pandocfilters (1.4.2-1) ... -Setting up python3-xdg (0.25-5) ... -Setting up python3-markupsafe (1.1.0-1) ... -Setting up python3-wheel (0.32.3-2) ... -Setting up python3-webencodings (0.5.1-1) ... -Setting up python3-psutil (5.5.1-1) ... -Setting up python3-tz (2019.1-1) ... -Setting up gcc (4:8.3.0-1) ... -Setting up python3-atomicwrites (1.1.5-2) ... -Setting up python3-six (1.12.0-1) ... -Setting up python3-simplejson (3.16.0-1) ... -Setting up dirmngr (2.2.12-1) ... -Setting up python3-pil:amd64 (5.4.1-2) ... -Setting up python3-decorator (4.3.0-1.1) ... -Setting up perl (5.28.1-6) ... -Setting up python3-jinja2 (2.10-2) ... -Setting up python3-pygments (2.3.1+dfsg-1) ... -Setting up libexpat1-dev:amd64 (2.2.6-2) ... -Setting up python3-wcwidth (0.1.7+dfsg1-3) ... -Setting up python3-pyparsing (2.2.0+dfsg1-2) ... -Setting up libdsdp-5.8gf (5.8-9.4) ... -Setting up python3-testpath (0.4.2+dfsg-1) ... -Setting up python3-zmq (17.1.2-2) ... -Setting up python3-gi (3.30.4-1) ... -Setting up python3-cycler (0.10.0-1) ... -Setting up python3-html5lib (1.0.1-1) ... -Setting up python3-pickleshare (0.7.5-1) ... -Setting up libdpkg-perl (1.19.7) ... -Setting up python3-pluggy (0.8.0-1) ... -Setting up gpg-wks-server (2.2.12-1) ... -Setting up g++-8 (8.3.0-6) ... -Setting up python3-lxml:amd64 (4.3.2-1) ... -Setting up python3-crypto (2.6.1-9+b1) ... -Setting up python3-dateutil (2.7.3-3) ... -Setting up libxss1:amd64 (1:1.2.3-1) ... -Setting up libfontconfig1:amd64 (2.13.1-2) ... -Setting up python3-simplegeneric (0.8.1-2) ... -Setting up python3-lib2to3 (3.7.3-1) ... -Setting up python3-mistune (0.8.4-1) ... -Setting up python3-asn1crypto (0.24.0-1) ... -Setting up python3-soupsieve (1.8+dfsg-1) ... -Setting up libcholmod3:amd64 (1:5.4.0+dfsg-1) ... -Setting up python3-cffi-backend (1.12.2-1) ... -Setting up python3-ptyprocess (0.6.0-1) ... -Setting up python3-pkg-resources (40.8.0-1) ... -Setting up python3-entrypoints (0.3-1) ... -Setting up python3-prompt-toolkit (1.0.15-1) ... -Setting up python3-distutils (3.7.3-1) ... -Setting up dh-python (3.20190308) ... -Setting up python3-more-itertools (4.2.0-1) ... -Setting up python3-attr (18.2.0-1) ... -Setting up python3-tornado (5.1.1-4) ... -Setting up python3-dbus (1.2.8-3) ... -Setting up libxft2:amd64 (2.3.2-2) ... -Setting up python3-setuptools (40.8.0-1) ... -Setting up gpg-wks-client (2.2.12-1) ... -Setting up python3-py (1.7.0-2) ... -Setting up python3-joblib (0.13.0-2) ... -Setting up libfile-fcntllock-perl (0.22-3+b5) ... -Setting up python3-defusedxml (0.5.0-2) ... -Setting up libalgorithm-diff-perl (1.19.03-2) ... -Setting up python3-ipython-genutils (0.2.0-1) ... -Setting up python3-pytest (3.10.1-2) ... -Setting up libpython3.7-dev:amd64 (3.7.3-2) ... -Setting up python3-olefile (0.46-1) ... -Setting up libtk8.6:amd64 (8.6.9-2) ... -Setting up python3.7-dev (3.7.3-2) ... -Setting up python3-bs4 (4.7.1-1) ... -Setting up dpkg-dev (1.19.7) ... -Setting up python3-bleach (3.1.0-1) ... -Setting up python3-chardet (3.0.4-3) ... -Setting up libumfpack5:amd64 (1:5.4.0+dfsg-1) ... -Setting up python3-jsonschema (2.6.0-4) ... -update-alternatives: using /usr/bin/python3-jsonschema to provide /usr/bin/jsonschema (jsonschema) in auto mode -Setting up python3-pexpect (4.6.0-1) ... -Setting up python3-cryptography (2.6.1-3) ... -Setting up python3-kiwisolver (1.0.1-2+b1) ... -Setting up python3-pip (18.1-5) ... -Setting up python3-numpy (1:1.16.2-1) ... -Setting up g++ (4:8.3.0-1) ... -update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode -Setting up python3-traitlets (4.3.2-1) ... -Setting up python3-keyrings.alt (3.1.1-1) ... -Setting up gnupg (2.2.12-1) ... -Setting up build-essential (12.6) ... -Setting up libalgorithm-diff-xs-perl (0.04-5+b1) ... -Setting up python3-statsmodels-lib (0.8.0-9) ... -Setting up python3-jupyter-core (4.4.0-2) ... -Setting up libalgorithm-merge-perl (0.08-3) ... -Setting up tk8.6-blt2.5 (2.5.3+dfsg-4) ... -Setting up python3-matplotlib (3.0.2-2) ... -Setting up python3-scipy (1.1.0-7) ... -Setting up libpython3-dev:amd64 (3.7.3-1) ... -Setting up python3-cvxopt (1.1.9+dfsg-3+b1) ... -Setting up python3-tables-lib (3.4.4-2) ... -Setting up blt (2.5.3+dfsg-4) ... -Setting up python3-pandas-lib (0.23.3+dfsg-3) ... -Setting up python3-tk:amd64 (3.7.3-1) ... -Setting up python3-nbformat (4.4.0-1) ... -Setting up python3-patsy (0.5.0+git13-g54dcf7b-1) ... -Setting up python3-pandas (0.23.3+dfsg-3) ... -Setting up python3-secretstorage (2.3.1-2) ... -Setting up python3-ipython (5.8.0-1) ... -Setting up python3-dev (3.7.3-1) ... -Setting up python3-numexpr (2.6.9-1) ... -Setting up python3-statsmodels (0.8.0-9) ... -Setting up python3-keyring (17.1.1-1) ... -Setting up python3-jupyter-client (5.2.3-1) ... -Setting up python3-tables (3.4.4-2) ... -Setting up python3-ipykernel (4.9.0-1) ... -Setting up python3-nbconvert (5.4-2) ... -Setting up jupyter-nbconvert (5.4-2) ... -Processing triggers for libc-bin (2.28-10) ... -Processing triggers for ca-certificates (20190110) ... -Updating certificates in /etc/ssl/certs... -0 added, 0 removed; done. -Running hooks in /etc/ca-certificates/update.d... -done. +Selecting previously unselected package perl-modules-5.28. +(Reading database ... (Reading database ... 5%(Reading database ... 10%(Reading database ... 15%(Reading database ... 20%(Reading database ... 25%(Reading database ... 30%(Reading database ... 35%(Reading database ... 40%(Reading database ... 45%(Reading database ... 50%(Reading database ... 55%(Reading database ... 60%(Reading database ... 65%(Reading database ... 70%(Reading database ... 75%(Reading database ... 80%(Reading database ... 85%(Reading database ... 90%(Reading database ... 95%(Reading database ... 100%(Reading database ... 6674 files and directories currently installed.) +Preparing to unpack .../0-perl-modules-5.28_5.28.1-6_all.deb ... +Unpacking perl-modules-5.28 (5.28.1-6) ... +Selecting previously unselected package libgdbm6:amd64. +Preparing to unpack .../1-libgdbm6_1.18.1-4_amd64.deb ... +Unpacking libgdbm6:amd64 (1.18.1-4) ... +Selecting previously unselected package libgdbm-compat4:amd64. +Preparing to unpack .../2-libgdbm-compat4_1.18.1-4_amd64.deb ... +Unpacking libgdbm-compat4:amd64 (1.18.1-4) ... +Selecting previously unselected package libperl5.28:amd64. +Preparing to unpack .../3-libperl5.28_5.28.1-6_amd64.deb ... +Unpacking libperl5.28:amd64 (5.28.1-6) ... +Selecting previously unselected package perl. +Preparing to unpack .../4-perl_5.28.1-6_amd64.deb ... +Unpacking perl (5.28.1-6) ... +Selecting previously unselected package liblocale-gettext-perl. +Preparing to unpack .../5-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... +Unpacking liblocale-gettext-perl (1.07-3+b4) ... +Selecting previously unselected package libssl1.1:amd64. +Preparing to unpack .../6-libssl1.1_1.1.1c-1_amd64.deb ... +Unpacking libssl1.1:amd64 (1.1.1c-1) ... +Selecting previously unselected package libpython3.7-minimal:amd64. +Preparing to unpack .../7-libpython3.7-minimal_3.7.3-2_amd64.deb ... +Unpacking libpython3.7-minimal:amd64 (3.7.3-2) ... +Selecting previously unselected package libexpat1:amd64. +Preparing to unpack .../8-libexpat1_2.2.6-2_amd64.deb ... +Unpacking libexpat1:amd64 (2.2.6-2) ... +Selecting previously unselected package python3.7-minimal. +Preparing to unpack .../9-python3.7-minimal_3.7.3-2_amd64.deb ... +Unpacking python3.7-minimal (3.7.3-2) ... +Setting up libssl1.1:amd64 (1.1.1c-1) ... +debconf: unable to initialize frontend: Dialog +debconf: (TERM is not set, so the dialog frontend is not usable.) +debconf: falling back to frontend: Readline +Setting up libpython3.7-minimal:amd64 (3.7.3-2) ... +Setting up libexpat1:amd64 (2.2.6-2) ... +Setting up python3.7-minimal (3.7.3-2) ... +Selecting previously unselected package python3-minimal. +(Reading database ... (Reading database ... 5%(Reading database ... 10%(Reading database ... 15%(Reading database ... 20%(Reading database ... 25%(Reading database ... 30%(Reading database ... 35%(Reading database ... 40%(Reading database ... 45%(Reading database ... 50%(Reading database ... 55%(Reading database ... 60%(Reading database ... 65%(Reading database ... 70%(Reading database ... 75%(Reading database ... 80%(Reading database ... 85%(Reading database ... 90%(Reading database ... 95%(Reading database ... 100%(Reading database ... 8896 files and directories currently installed.) +Preparing to unpack .../0-python3-minimal_3.7.3-1_amd64.deb ... +Unpacking python3-minimal (3.7.3-1) ... +Selecting previously unselected package mime-support. +Preparing to unpack .../1-mime-support_3.62_all.deb ... +Unpacking mime-support (3.62) ... +Selecting previously unselected package libmpdec2:amd64. +Preparing to unpack .../2-libmpdec2_2.4.2-2_amd64.deb ... +Unpacking libmpdec2:amd64 (2.4.2-2) ... +Selecting previously unselected package readline-common. +Preparing to unpack .../3-readline-common_7.0-5_all.deb ... +Unpacking readline-common (7.0-5) ... +Selecting previously unselected package libreadline7:amd64. +Preparing to unpack .../4-libreadline7_7.0-5_amd64.deb ... +Unpacking libreadline7:amd64 (7.0-5) ... +Selecting previously unselected package libsqlite3-0:amd64. +Preparing to unpack .../5-libsqlite3-0_3.27.2-3_amd64.deb ... +Unpacking libsqlite3-0:amd64 (3.27.2-3) ... +Selecting previously unselected package libpython3.7-stdlib:amd64. +Preparing to unpack .../6-libpython3.7-stdlib_3.7.3-2_amd64.deb ... +Unpacking libpython3.7-stdlib:amd64 (3.7.3-2) ... +Selecting previously unselected package python3.7. +Preparing to unpack .../7-python3.7_3.7.3-2_amd64.deb ... +Unpacking python3.7 (3.7.3-2) ... +Selecting previously unselected package libpython3-stdlib:amd64. +Preparing to unpack .../8-libpython3-stdlib_3.7.3-1_amd64.deb ... +Unpacking libpython3-stdlib:amd64 (3.7.3-1) ... +Setting up python3-minimal (3.7.3-1) ... +Selecting previously unselected package python3. +(Reading database ... 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libtiff5:amd64. +Preparing to unpack .../184-libtiff5_4.0.10-4_amd64.deb ... +Unpacking libtiff5:amd64 (4.0.10-4) ... +Selecting previously unselected package libumfpack5:amd64. +Preparing to unpack .../185-libumfpack5_1%3a5.4.0+dfsg-1_amd64.deb ... +Unpacking libumfpack5:amd64 (1:5.4.0+dfsg-1) ... +Selecting previously unselected package libwebpdemux2:amd64. +Preparing to unpack .../186-libwebpdemux2_0.6.1-2_amd64.deb ... +Unpacking libwebpdemux2:amd64 (0.6.1-2) ... +Selecting previously unselected package libwebpmux3:amd64. +Preparing to unpack .../187-libwebpmux3_0.6.1-2_amd64.deb ... +Unpacking libwebpmux3:amd64 (0.6.1-2) ... +Selecting previously unselected package libxml2:amd64. +Preparing to unpack .../188-libxml2_2.9.4+dfsg1-7+b3_amd64.deb ... +Unpacking libxml2:amd64 (2.9.4+dfsg1-7+b3) ... +Selecting previously unselected package libxslt1.1:amd64. +Preparing to unpack .../189-libxslt1.1_1.1.32-2_amd64.deb ... +Unpacking libxslt1.1:amd64 (1.1.32-2) ... +Selecting previously 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previously unselected package python3-pyparsing. +Preparing to unpack .../220-python3-pyparsing_2.2.0+dfsg1-2_all.deb ... +Unpacking python3-pyparsing (2.2.0+dfsg1-2) ... +Selecting previously unselected package python3-numpy. +Preparing to unpack .../221-python3-numpy_1%3a1.16.2-1_amd64.deb ... +Unpacking python3-numpy (1:1.16.2-1) ... +Selecting previously unselected package python3-matplotlib. +Preparing to unpack .../222-python3-matplotlib_3.0.2-2_amd64.deb ... +Unpacking python3-matplotlib (3.0.2-2) ... +Selecting previously unselected package python3-more-itertools. +Preparing to unpack .../223-python3-more-itertools_4.2.0-1_all.deb ... +Unpacking python3-more-itertools (4.2.0-1) ... +Selecting previously unselected package python3-numexpr. +Preparing to unpack .../224-python3-numexpr_2.6.9-1_amd64.deb ... +Unpacking python3-numexpr (2.6.9-1) ... +Selecting previously unselected package python3-olefile. +Preparing to unpack .../225-python3-olefile_0.46-1_all.deb ... +Unpacking python3-olefile (0.46-1) ... +Selecting previously unselected package python3-tz. +Preparing to unpack .../226-python3-tz_2019.1-1_all.deb ... +Unpacking python3-tz (2019.1-1) ... +Selecting previously unselected package python3-pandas-lib. +Preparing to unpack .../227-python3-pandas-lib_0.23.3+dfsg-3_amd64.deb ... +Unpacking python3-pandas-lib (0.23.3+dfsg-3) ... +Selecting previously unselected package python3-pandas. +Preparing to unpack .../228-python3-pandas_0.23.3+dfsg-3_all.deb ... +Unpacking python3-pandas (0.23.3+dfsg-3) ... +Selecting previously unselected package python3-patsy. +Preparing to unpack .../229-python3-patsy_0.5.0+git13-g54dcf7b-1_all.deb ... +Unpacking python3-patsy (0.5.0+git13-g54dcf7b-1) ... +Selecting previously unselected package python3-pil:amd64. +Preparing to unpack .../230-python3-pil_5.4.1-2_amd64.deb ... +Unpacking python3-pil:amd64 (5.4.1-2) ... +Selecting previously unselected package python3-pip. +Preparing to unpack .../231-python3-pip_18.1-5_all.deb ... +Unpacking python3-pip (18.1-5) ... +Selecting previously unselected package python3-pluggy. +Preparing to unpack .../232-python3-pluggy_0.8.0-1_all.deb ... +Unpacking python3-pluggy (0.8.0-1) ... +Selecting previously unselected package python3-psutil. +Preparing to unpack .../233-python3-psutil_5.5.1-1_amd64.deb ... +Unpacking python3-psutil (5.5.1-1) ... +Selecting previously unselected package python3-py. +Preparing to unpack .../234-python3-py_1.7.0-2_all.deb ... +Unpacking python3-py (1.7.0-2) ... +Selecting previously unselected package python3-pytest. +Preparing to unpack .../235-python3-pytest_3.10.1-2_all.deb ... +Unpacking python3-pytest (3.10.1-2) ... +Selecting previously unselected package python3-scipy. +Preparing to unpack .../236-python3-scipy_1.1.0-7_amd64.deb ... +Unpacking python3-scipy (1.1.0-7) ... +Selecting previously unselected package python3-setuptools. +Preparing to unpack .../237-python3-setuptools_40.8.0-1_all.deb ... +Unpacking python3-setuptools (40.8.0-1) ... +Selecting previously unselected package python3-simplejson. +Preparing to unpack .../238-python3-simplejson_3.16.0-1_amd64.deb ... +Unpacking python3-simplejson (3.16.0-1) ... +Selecting previously unselected package python3-statsmodels-lib. +Preparing to unpack .../239-python3-statsmodels-lib_0.8.0-9_amd64.deb ... +Unpacking python3-statsmodels-lib (0.8.0-9) ... +Selecting previously unselected package python3-statsmodels. +Preparing to unpack .../240-python3-statsmodels_0.8.0-9_all.deb ... +Unpacking python3-statsmodels (0.8.0-9) ... +Selecting previously unselected package python3-tables-lib. +Preparing to unpack .../241-python3-tables-lib_3.4.4-2_amd64.deb ... +Unpacking python3-tables-lib (3.4.4-2) ... +Selecting previously unselected package python3-tables. +Preparing to unpack .../242-python3-tables_3.4.4-2_all.deb ... +Unpacking python3-tables (3.4.4-2) ... +Selecting previously unselected package python3-tk:amd64. +Preparing to unpack .../243-python3-tk_3.7.3-1_amd64.deb ... +Unpacking python3-tk:amd64 (3.7.3-1) ... +Selecting previously unselected package python3-wheel. +Preparing to unpack .../244-python3-wheel_0.32.3-2_all.deb ... +Unpacking python3-wheel (0.32.3-2) ... +Selecting previously unselected package python3-xdg. +Preparing to unpack .../245-python3-xdg_0.25-5_all.deb ... +Unpacking python3-xdg (0.25-5) ... +Selecting previously unselected package shared-mime-info. +Preparing to unpack .../246-shared-mime-info_1.10-1_amd64.deb ... +Unpacking shared-mime-info (1.10-1) ... +Selecting previously unselected package xdg-user-dirs. +Preparing to unpack .../247-xdg-user-dirs_0.17-2_amd64.deb ... +Unpacking xdg-user-dirs (0.17-2) ... +Setting up perl-modules-5.28 (5.28.1-6) ... +Setting up libksba8:amd64 (1.3.5-2) ... +Setting up javascript-common (11) ... +Setting up liblcms2-2:amd64 (2.9-3) ... +Setting up lsb-base (10.2019051400) ... +Setting up libxau6:amd64 (1:1.0.8-1+b2) ... +Setting up libkeyutils1:amd64 (1.6-6) ... +Setting up libapparmor1:amd64 (2.13.2-10) ... +Setting up ttf-bitstream-vera (1.10-8) ... +Setting up libsodium23:amd64 (1.0.17-1) ... +Setting up libgpm2:amd64 (1.20.7-5) ... +Setting up mime-support (3.62) ... +Setting up libgslcblas0:amd64 (2.5+dfsg-6) ... +Setting up xdg-user-dirs (0.17-2) ... +Setting up libmagic-mgc (1:5.35-4) ... +Setting up psmisc (23.2-1) ... +Setting up libyaml-0-2:amd64 (0.2.1-1) ... +Setting up libglib2.0-0:amd64 (2.58.3-2) ... +No schema files found: doing nothing. +Setting up manpages (4.16-2) ... +Setting up fonts-lyx (2.3.2-1) ... +Setting up libprocps7:amd64 (2:3.3.15-2) ... +Setting up libsqlite3-0:amd64 (3.27.2-3) ... +Setting up libsasl2-modules:amd64 (2.1.27+dfsg-1) ... +Setting up libnorm1:amd64 (1.5.8+dfsg2-1) ... +Setting up binutils-common:amd64 (2.31.1-16) ... +Setting up x11-common (1:7.7+19) ... +debconf: unable to initialize frontend: Dialog +debconf: (TERM is not set, so the dialog frontend is not usable.) +debconf: falling back to frontend: Readline +update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults +invoke-rc.d: could not determine current runlevel +invoke-rc.d: policy-rc.d denied execution of start. +Setting up libmagic1:amd64 (1:5.35-4) ... +Setting up linux-libc-dev:amd64 (4.19.37-5+deb10u1) ... +Setting up liblzo2-2:amd64 (2.10-0.1) ... +Setting up libnpth0:amd64 (1.6-1) ... +Setting up krb5-locales (1.17-3) ... +Setting up libmetis5:amd64 (5.1.0.dfsg-5+b2) ... +Setting up file (1:5.35-4) ... +Setting up libassuan0:amd64 (2.5.2-1) ... +Setting up libgomp1:amd64 (8.3.0-6) ... +Setting up bzip2 (1.0.6-9.1) ... +Setting up libldap-common (2.4.47+dfsg-3) ... +Setting up libjbig0:amd64 (2.1-3.1+b2) ... +Setting up libaec0:amd64 (1.0.2-1) ... +Setting up libicu63:amd64 (63.1-6) ... +Setting up libfakeroot:amd64 (1.23-1) ... +Setting up libsnappy1v5:amd64 (1.1.7-1) ... +Setting up libkrb5support0:amd64 (1.17-3) ... +Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1) ... +Setting up fakeroot (1.23-1) ... +update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode +Setting up libasan5:amd64 (8.3.0-6) ... +Setting up libglib2.0-data (2.58.3-2) ... +Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+b1) ... +Setting up libx11-data (2:1.6.7-1) ... +Setting up make (4.2.1-1.2) ... +Setting up libmpfr6:amd64 (4.0.2-1) ... +Setting up gnupg-l10n (2.2.12-1) ... +Setting up libgsl23:amd64 (2.5+dfsg-6) ... +Setting up libncurses6:amd64 (6.1+20181013-2) ... +Setting up libdbus-1-3:amd64 (1.12.16-1) ... +Setting up dbus (1.12.16-1) ... +invoke-rc.d: could not determine current runlevel +invoke-rc.d: policy-rc.d denied execution of start. +Setting up xz-utils (5.2.4-1) ... +update-alternatives: using /usr/bin/xz to provide /usr/bin/lzma (lzma) in auto mode +Setting up libquadmath0:amd64 (8.3.0-6) ... +Setting up libimagequant0:amd64 (2.12.2-1.1) ... +Setting up libpng16-16:amd64 (1.6.36-6) ... +Setting up libmpc3:amd64 (1.1.0-1) ... +Setting up libatomic1:amd64 (8.3.0-6) ... +Setting up patch (2.7.6-3) ... +Setting up libtcl8.6:amd64 (8.6.9+dfsg-2) ... +Setting up libwebp6:amd64 (0.6.1-2) ... +Setting up libk5crypto3:amd64 (1.17-3) ... +Setting up libltdl7:amd64 (2.4.6-9) ... +Setting up libfftw3-double3:amd64 (3.3.8-2) ... +Setting up libsasl2-2:amd64 (2.1.27+dfsg-1) ... +Setting up libgfortran5:amd64 (8.3.0-6) ... +Setting up libmpx2:amd64 (8.3.0-6) ... +Setting up libubsan1:amd64 (8.3.0-6) ... +Setting up libisl19:amd64 (0.20-2) ... +Setting up sensible-utils (0.0.12) ... +Setting up procps (2:3.3.15-2) ... +update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode +Setting up liblua5.1-0:amd64 (5.1.5-8.1+b2) ... +Setting up libblosc1 (1.15.1+ds1-1) ... +Setting up libgirepository-1.0-1:amd64 (1.58.3-2) ... +Setting up netbase (5.6) ... +Setting up libkrb5-3:amd64 (1.17-3) ... +Setting up libtiff5:amd64 (4.0.10-4) ... +Setting up libmpdec2:amd64 (2.4.2-2) ... +Setting up pandoc-data (2.2.1-3) ... +Setting up libjs-jquery (3.3.1~dfsg-3) ... +Setting up libbinutils:amd64 (2.31.1-16) ... +Setting up cpp-8 (8.3.0-6) ... +Setting up libc-dev-bin (2.28-10) ... +Setting up python-matplotlib-data (3.0.2-2) ... +Setting up openssl (1.1.1c-1) ... +Setting up libwebpmux3:amd64 (0.6.1-2) ... +Setting up libbsd0:amd64 (0.9.1-2) ... +Setting up readline-common (7.0-5) ... +Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... +Setting up python-tables-data (3.4.4-2) ... +Setting up libsuitesparseconfig5:amd64 (1:5.4.0+dfsg-1) ... +Setting up libcc1-0:amd64 (8.3.0-6) ... +Setting up liblocale-gettext-perl (1.07-3+b4) ... +Setting up liblsan0:amd64 (8.3.0-6) ... +Setting up libsz2:amd64 (1.0.2-1) ... +Setting up libitm1:amd64 (8.3.0-6) ... +Setting up libreadline7:amd64 (7.0-5) ... +Setting up libpgm-5.2-0:amd64 (5.2.122~dfsg-3) ... +Setting up libgdbm6:amd64 (1.18.1-4) ... +Setting up gnupg-utils (2.2.12-1) ... +Setting up binutils-x86-64-linux-gnu (2.31.1-16) ... +Setting up libtsan0:amd64 (8.3.0-6) ... +Setting up pinentry-curses (1.1.0-2) ... +Setting up libamd2:amd64 (1:5.4.0+dfsg-1) ... +Setting up manpages-dev (4.16-2) ... +Setting up libxdmcp6:amd64 (1:1.1.2-3) ... +Setting up libpython3.7-stdlib:amd64 (3.7.3-2) ... +Setting up libxcb1:amd64 (1.13.1-2) ... +Setting up libcolamd2:amd64 (1:5.4.0+dfsg-1) ... +Setting up libpython3.7:amd64 (3.7.3-2) ... +Setting up libwebpdemux2:amd64 (0.6.1-2) ... +Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3) ... +Setting up binutils (2.31.1-16) ... +Setting up ca-certificates (20190110) ... +debconf: unable to initialize frontend: Dialog +debconf: (TERM is not set, so the dialog frontend is not usable.) +debconf: falling back to frontend: Readline +Updating certificates in /etc/ssl/certs... +128 added, 0 removed; done. +Setting up libcamd2:amd64 (1:5.4.0+dfsg-1) ... +Setting up libblas3:amd64 (3.8.0-2) ... +update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode +Setting up libjs-jquery-ui (1.12.1+dfsg-5) ... +Setting up pandoc (2.2.1-3+b2) ... +Setting up libfreetype6:amd64 (2.9.1-3) ... +Setting up libglpk40:amd64 (4.65-2) ... +Setting up libhdf5-103:amd64 (1.10.4+repack-10) ... +Setting up shared-mime-info (1.10-1) ... +Setting up libgssapi-krb5-2:amd64 (1.17-3) ... +Setting up libgdbm-compat4:amd64 (1.18.1-4) ... +Setting up ucf (3.0038+nmu1) ... +debconf: unable to initialize frontend: Dialog +debconf: (TERM is not set, so the dialog frontend is not usable.) +debconf: falling back to frontend: Readline +Setting up gir1.2-glib-2.0:amd64 (1.58.3-2) ... +Setting up libgcc-8-dev:amd64 (8.3.0-6) ... +Setting up libperl5.28:amd64 (5.28.1-6) ... +Setting up libccolamd2:amd64 (1:5.4.0+dfsg-1) ... +Setting up cpp (4:8.3.0-1) ... +Setting up libxslt1.1:amd64 (1.1.32-2) ... +Setting up gpgconf (2.2.12-1) ... +Setting up libc6-dev:amd64 (2.28-10) ... +Setting up libx11-6:amd64 (2:1.6.7-1) ... +Setting up python-pip-whl (18.1-5) ... +Setting up gpg (2.2.12-1) ... +Setting up libpython3-stdlib:amd64 (3.7.3-1) ... +Setting up libstdc++-8-dev:amd64 (8.3.0-6) ... +Setting up python3.7 (3.7.3-2) ... +Setting up liblapack3:amd64 (3.8.0-2) ... +update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode +Setting up gcc-8 (8.3.0-6) ... +Setting up gpg-agent (2.2.12-1) ... +Setting up libzmq5:amd64 (4.3.1-4+deb10u1) ... +Setting up libxrender1:amd64 (1:0.9.10-1) ... +Setting up fontconfig-config (2.13.1-2) ... +debconf: unable to initialize frontend: Dialog +debconf: (TERM is not set, so the dialog frontend is not usable.) +debconf: falling back to frontend: Readline +Setting up gpgsm (2.2.12-1) ... +Setting up libxext6:amd64 (2:1.3.3-1+b2) ... +Setting up python3 (3.7.3-1) ... +running python rtupdate hooks for python3.7... +running python post-rtupdate hooks for python3.7... +Setting up python3-pandocfilters (1.4.2-1) ... +Setting up python3-xdg (0.25-5) ... +Setting up python3-markupsafe (1.1.0-1) ... +Setting up python3-wheel (0.32.3-2) ... +Setting up python3-webencodings (0.5.1-1) ... +Setting up python3-psutil (5.5.1-1) ... +Setting up python3-tz (2019.1-1) ... +Setting up gcc (4:8.3.0-1) ... +Setting up python3-atomicwrites (1.1.5-2) ... +Setting up python3-six (1.12.0-1) ... +Setting up python3-simplejson (3.16.0-1) ... +Setting up dirmngr (2.2.12-1) ... +Setting up python3-pil:amd64 (5.4.1-2) ... +Setting up python3-decorator (4.3.0-1.1) ... +Setting up perl (5.28.1-6) ... +Setting up python3-jinja2 (2.10-2) ... +Setting up python3-pygments (2.3.1+dfsg-1) ... +Setting up libexpat1-dev:amd64 (2.2.6-2) ... +Setting up python3-wcwidth (0.1.7+dfsg1-3) ... +Setting up python3-pyparsing (2.2.0+dfsg1-2) ... +Setting up libdsdp-5.8gf (5.8-9.4) ... +Setting up python3-testpath (0.4.2+dfsg-1) ... +Setting up python3-zmq (17.1.2-2) ... +Setting up python3-gi (3.30.4-1) ... +Setting up python3-cycler (0.10.0-1) ... +Setting up python3-html5lib (1.0.1-1) ... +Setting up python3-pickleshare (0.7.5-1) ... +Setting up libdpkg-perl (1.19.7) ... +Setting up python3-pluggy (0.8.0-1) ... +Setting up gpg-wks-server (2.2.12-1) ... +Setting up g++-8 (8.3.0-6) ... +Setting up python3-lxml:amd64 (4.3.2-1) ... +Setting up python3-crypto (2.6.1-9+b1) ... +Setting up python3-dateutil (2.7.3-3) ... +Setting up libxss1:amd64 (1:1.2.3-1) ... +Setting up libfontconfig1:amd64 (2.13.1-2) ... +Setting up python3-simplegeneric (0.8.1-2) ... +Setting up python3-lib2to3 (3.7.3-1) ... +Setting up python3-mistune (0.8.4-1) ... +Setting up python3-asn1crypto (0.24.0-1) ... +Setting up python3-soupsieve (1.8+dfsg-1) ... +Setting up libcholmod3:amd64 (1:5.4.0+dfsg-1) ... +Setting up python3-cffi-backend (1.12.2-1) ... +Setting up python3-ptyprocess (0.6.0-1) ... +Setting up python3-pkg-resources (40.8.0-1) ... +Setting up python3-entrypoints (0.3-1) ... +Setting up python3-prompt-toolkit (1.0.15-1) ... +Setting up python3-distutils (3.7.3-1) ... +Setting up dh-python (3.20190308) ... +Setting up python3-more-itertools (4.2.0-1) ... +Setting up python3-attr (18.2.0-1) ... +Setting up python3-tornado (5.1.1-4) ... +Setting up python3-dbus (1.2.8-3) ... +Setting up libxft2:amd64 (2.3.2-2) ... +Setting up python3-setuptools (40.8.0-1) ... +Setting up gpg-wks-client (2.2.12-1) ... +Setting up python3-py (1.7.0-2) ... +Setting up python3-joblib (0.13.0-2) ... +Setting up libfile-fcntllock-perl (0.22-3+b5) ... +Setting up python3-defusedxml (0.5.0-2) ... +Setting up libalgorithm-diff-perl (1.19.03-2) ... +Setting up python3-ipython-genutils (0.2.0-1) ... +Setting up python3-pytest (3.10.1-2) ... +Setting up libpython3.7-dev:amd64 (3.7.3-2) ... +Setting up python3-olefile (0.46-1) ... +Setting up libtk8.6:amd64 (8.6.9-2) ... +Setting up python3.7-dev (3.7.3-2) ... +Setting up python3-bs4 (4.7.1-1) ... +Setting up dpkg-dev (1.19.7) ... +Setting up python3-bleach (3.1.0-1) ... +Setting up python3-chardet (3.0.4-3) ... +Setting up libumfpack5:amd64 (1:5.4.0+dfsg-1) ... +Setting up python3-jsonschema (2.6.0-4) ... +update-alternatives: using /usr/bin/python3-jsonschema to provide /usr/bin/jsonschema (jsonschema) in auto mode +Setting up python3-pexpect (4.6.0-1) ... +Setting up python3-cryptography (2.6.1-3) ... +Setting up python3-kiwisolver (1.0.1-2+b1) ... +Setting up python3-pip (18.1-5) ... +Setting up python3-numpy (1:1.16.2-1) ... +Setting up g++ (4:8.3.0-1) ... +update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode +Setting up python3-traitlets (4.3.2-1) ... +Setting up python3-keyrings.alt (3.1.1-1) ... +Setting up gnupg (2.2.12-1) ... +Setting up build-essential (12.6) ... +Setting up libalgorithm-diff-xs-perl (0.04-5+b1) ... +Setting up python3-statsmodels-lib (0.8.0-9) ... +Setting up python3-jupyter-core (4.4.0-2) ... +Setting up libalgorithm-merge-perl (0.08-3) ... +Setting up tk8.6-blt2.5 (2.5.3+dfsg-4) ... +Setting up python3-matplotlib (3.0.2-2) ... +Setting up python3-scipy (1.1.0-7) ... +Setting up libpython3-dev:amd64 (3.7.3-1) ... +Setting up python3-cvxopt (1.1.9+dfsg-3+b1) ... +Setting up python3-tables-lib (3.4.4-2) ... +Setting up blt (2.5.3+dfsg-4) ... +Setting up python3-pandas-lib (0.23.3+dfsg-3) ... +Setting up python3-tk:amd64 (3.7.3-1) ... +Setting up python3-nbformat (4.4.0-1) ... +Setting up python3-patsy (0.5.0+git13-g54dcf7b-1) ... +Setting up python3-pandas (0.23.3+dfsg-3) ... +Setting up python3-secretstorage (2.3.1-2) ... +Setting up python3-ipython (5.8.0-1) ... +Setting up python3-dev (3.7.3-1) ... +Setting up python3-numexpr (2.6.9-1) ... +Setting up python3-statsmodels (0.8.0-9) ... +Setting up python3-keyring (17.1.1-1) ... +Setting up python3-jupyter-client (5.2.3-1) ... +Setting up python3-tables (3.4.4-2) ... +Setting up python3-ipykernel (4.9.0-1) ... +Setting up python3-nbconvert (5.4-2) ... +Setting up jupyter-nbconvert (5.4-2) ... +Processing triggers for libc-bin (2.28-10) ... +Processing triggers for ca-certificates (20190110) ... +Updating certificates in /etc/ssl/certs... +0 added, 0 removed; done. +Running hooks in /etc/ca-certificates/update.d... +done. ---> 9d49dddc5394 Removing intermediate container e2a4b2e6b46b Successfully built 9d49dddc5394 @@ -3297,9 +3895,9 @@ cat /etc/apt/sources.list #+RESULTS: : -: deb http://snapshot.debian.org/archive/debian/20190708T033000Z oldoldstable main +: deb http://snapshot.debian.org/archive/debian/20190708T033000Z oldoldstable main : deb http://deb.debian.org/debian oldoldstable main -: deb http://snapshot.debian.org/archive/debian-security/20190708T033000Z oldoldstable/updates main +: deb http://snapshot.debian.org/archive/debian-security/20190708T033000Z oldoldstable/updates main : deb http://security.debian.org/debian-security oldoldstable/updates main @@ -3373,46 +3971,46 @@ done #+RESULTS: #+begin_example -for i in python3-ipykernel jupyter-nbconvert python3-matplotlib python3- pandas python3-numpy python3-statsmodels ; do +for i in python3-ipykernel jupyter-nbconvert python3-matplotlib python3- pandas python3-numpy python3-statsmodels ; do echo "===== $i ====="; dpkg -s $i -done -===== python3-ipykernel ===== -dpkg-query: package 'python3-ipykernel' is not installed and no information is available -Use dpkg --info (= dpkg-deb --info) to examine archive files, -and dpkg --contents (= dpkg-deb --contents) to list their contents. -===== jupyter-nbconvert ===== -dpkg-query: package 'jupyter-nbconvert' is not installed and no information is available -Use dpkg --info (= dpkg-deb --info) to examine archive files, -and dpkg --contents (= dpkg-deb --contents) to list their contents. -===== python3-matplotlib ===== -Package: python3-matplotlib -Status: install ok installed -Priority: optional -Section: python +done +===== python3-ipykernel ===== +dpkg-query: package 'python3-ipykernel' is not installed and no information is available +Use dpkg --info (= dpkg-deb --info) to examine archive files, +and dpkg --contents (= dpkg-deb --contents) to list their contents. +===== jupyter-nbconvert ===== +dpkg-query: package 'jupyter-nbconvert' is not installed and no information is available +Use dpkg --info (= dpkg-deb --info) to examine archive files, +and dpkg --contents (= dpkg-deb --contents) to list their contents. +===== python3-matplotlib ===== +Package: python3-matplotlib +Status: install ok installed +Priority: optional +Section: python Installed-Size: 12987 -Architecture: amd64 -Source: matplotlib +Architecture: amd64 +Source: matplotlib Version: 1.4.2-3.1 -= 1.4.2-3.1), python3-pyparsing (>= 1.5.6), python3-six (>= 1.4), python3-tz, libjs-jquery, libjs-jquery-ui, python3-numpy (>= 1:1.8.0), python3-numpy-abi9, python3 (<< 3.5), python3 (>= 3.4~), python3-nose, libc6 (>= 2.14), libfreetype6 (>= 2.2.1), libgcc1 (>= 1:4.1.1), libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.6), libtcl8.6 (>= 8.6.0), libtk8.6 (>= 8.6.0) -Recommends: python3-pil, python3-tk -Suggests: dvipng, gir1.2-gtk-3.0, ghostscript, inkscape, ipython3, librsvg2-common, python-matplotlib-doc, python3-cairocffi, python3-gi, python3-gi-cairo, python3-gobject, python3-pyqt4, python3-scipy, python3-sip, python3-tornado, texlive-extra-utils, texlive-latex-extra, ttf-staypuft -Enhances: ipython3 -Description: Python based plotting system in a style similar to Matlab (Python 3) - Matplotlib is a pure Python plotting library designed to bring - publication quality plotting to Python with a syntax familiar to - Matlab users. All of the plotting commands in the pylab interface can - be accessed either via a functional interface familiar to Matlab - users or an object oriented interface familiar to Python users. - . - This package contains the Python 3 version of matplotlib. -Homepage: http://matplotlib.org/ -===== python3-pandas ===== -echo 'org_babel_sh_eoe' -Package: python3-pandas -Status: install ok installed -Priority: optional -Section: python += 1.4.2-3.1), python3-pyparsing (>= 1.5.6), python3-six (>= 1.4), python3-tz, libjs-jquery, libjs-jquery-ui, python3-numpy (>= 1:1.8.0), python3-numpy-abi9, python3 (<< 3.5), python3 (>= 3.4~), python3-nose, libc6 (>= 2.14), libfreetype6 (>= 2.2.1), libgcc1 (>= 1:4.1.1), libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.6), libtcl8.6 (>= 8.6.0), libtk8.6 (>= 8.6.0) +Recommends: python3-pil, python3-tk +Suggests: dvipng, gir1.2-gtk-3.0, ghostscript, inkscape, ipython3, librsvg2-common, python-matplotlib-doc, python3-cairocffi, python3-gi, python3-gi-cairo, python3-gobject, python3-pyqt4, python3-scipy, python3-sip, python3-tornado, texlive-extra-utils, texlive-latex-extra, ttf-staypuft +Enhances: ipython3 +Description: Python based plotting system in a style similar to Matlab (Python 3) + Matplotlib is a pure Python plotting library designed to bring + publication quality plotting to Python with a syntax familiar to + Matlab users. All of the plotting commands in the pylab interface can + be accessed either via a functional interface familiar to Matlab + users or an object oriented interface familiar to Python users. + . + This package contains the Python 3 version of matplotlib. +Homepage: http://matplotlib.org/ +===== python3-pandas ===== +echo 'org_babel_sh_eoe' +Package: python3-pandas +Status: install ok installed +Priority: optional +Section: python Installed-Size: 8903 #+end_example @@ -3477,7 +4075,7 @@ docker run -t -i debian:stretch-20190708-slim : Unable to find image 'debian:stretch-20190708-slim' locally : stretch-20190708-slim: Pulling from library/debian : -:  0a4690c5d889: Pulling fs layer  0a4690c5d889: Downloading 228.5kB/22.49MB  0a4690c5d889: Downloading 457.5kB/22.49MB  0a4690c5d889: Downloading 695kB/22.49MB  0a4690c5d889: Downloading 920.3kB/22.49MB  0a4690c5d889: Downloading 1.15MB/22.49MB  0a4690c5d889: Downloading 1.379MB/22.49MB  0a4690c5d889: Downloading 1.617MB/22.49MB  0a4690c5d889: 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stretch/updates main +: deb http://snapshot.debian.org/archive/debian-security/20190708T033000Z stretch/updates main : deb http://security.debian.org/debian-security stretch/updates main -: deb http://snapshot.debian.org/archive/debian/20190708T033000Z stretch-updates main +: deb http://snapshot.debian.org/archive/debian/20190708T033000Z stretch-updates main : deb http://deb.debian.org/debian stretch-updates main #+begin_src shell :session *docker* :results output :exports both @@ -3544,21 +4142,21 @@ done #+RESULTS: #+begin_example -for i in python3-ipykernel jupyter-nbconvert python3-matplotlib python3 3-pandas python3-numpy python3-statsmodels ; do +for i in python3-ipykernel jupyter-nbconvert python3-matplotlib python33-pandas python3-numpy python3-statsmodels ; do echo $i; apt-cache show $i | grep Version ; -done -python3-ipykernel -E: No packages found -jupyter-nbconvert -E: No packages found -python3-matplotlib -E: No packages found -python3-pandas -E: No packages found -python3-numpy -E: No packages found -python3-statsmodels +done +python3-ipykernel +E: No packages found +jupyter-nbconvert +E: No packages found +python3-matplotlib +E: No packages found +python3-pandas +E: No packages found +python3-numpy +E: No packages found +python3-statsmodels E: No packages found #+end_example @@ -3581,21 +4179,21 @@ done #+RESULTS: #+begin_example -for i in python3-ipykernel jupyter-nbconvert python3-matplotlib python3 3-pandas python3-numpy python3-statsmodels ; do +for i in python3-ipykernel jupyter-nbconvert python3-matplotlib python33-pandas python3-numpy python3-statsmodels ; do echo $i; apt-cache show $i | grep Version ; -done -python3-ipykernel -E: No packages found -jupyter-nbconvert -E: No packages found -python3-matplotlib -E: No packages found -python3-pandas -E: No packages found -python3-numpy -E: No packages found -python3-statsmodels +done +python3-ipykernel +E: No packages found +jupyter-nbconvert +E: No packages found +python3-matplotlib +E: No packages found +python3-pandas +E: No packages found +python3-numpy +E: No packages found +python3-statsmodels E: No packages found #+end_example @@ -3623,11 +4221,11 @@ cat /etc/apt/sources.list #+RESULTS: : -: deb http://snapshot.debian.org/archive/debian/20190708T033000Z stretch main +: deb http://snapshot.debian.org/archive/debian/20190708T033000Z stretch main : deb http://deb.debian.org/debian stretch main -: deb http://snapshot.debian.org/archive/debian-security/20190708T033000Z stretch/updates main +: deb http://snapshot.debian.org/archive/debian-security/20190708T033000Z stretch/updates main : deb http://security.debian.org/debian-security stretch/updates main -: deb http://snapshot.debian.org/archive/debian/20190708T033000Z stretch-updates main +: deb http://snapshot.debian.org/archive/debian/20190708T033000Z stretch-updates main : deb http://deb.debian.org/debian stretch-updates main #+begin_src shell :session *docker* :results output :exports both @@ -3638,9 +4236,9 @@ cat /etc/apt/sources.list #+RESULTS: : -: echo "deb http://snapshot.debian.org/archive/debian/20170929T215212Z/ / testing main" > /etc/apt/sources.list -: echo "deb http://snapshot.debian.org/archive/debian/20180310T130644Z/ t testing main" > /etc/apt/sources.list -: cat /etc/apt/sources.list +: echo "deb http://snapshot.debian.org/archive/debian/20170929T215212Z// testing main" > /etc/apt/sources.list +: echo "deb http://snapshot.debian.org/archive/debian/20180310T130644Z/ ttesting main" > /etc/apt/sources.list +: cat /etc/apt/sources.list : deb http://snapshot.debian.org/archive/debian/20180310T130644Z/ testing main Inspiring from: https://unix.stackexchange.com/questions/2544/how-to-work-around-release-file-expired-problem-on-a-local-mirror @@ -3658,21 +4256,21 @@ done #+RESULTS: #+begin_example -for i in python3-ipykernel jupyter-nbconvert python3-matplotlib python3 3-pandas python3-numpy python3-statsmodels ; do +for i in python3-ipykernel jupyter-nbconvert python3-matplotlib python33-pandas python3-numpy python3-statsmodels ; do echo $i; apt-cache show $i | grep Version ; -done -python3-ipykernel -Version: 4.8.2-2 -jupyter-nbconvert -Version: 5.3.1-1 -python3-matplotlib -Version: 2.1.1-2 -python3-pandas -Version: 0.20.3-11 -python3-numpy -Version: 1:1.13.3-2 -python3-statsmodels +done +python3-ipykernel +Version: 4.8.2-2 +jupyter-nbconvert +Version: 5.3.1-1 +python3-matplotlib +Version: 2.1.1-2 +python3-pandas +Version: 0.20.3-11 +python3-numpy +Version: 1:1.13.3-2 +python3-statsmodels Version: 0.8.0-6 #+end_example @@ -3685,14 +4283,14 @@ apt-get install -y python3 \ #+RESULTS: #+begin_example apt-get install -y python3 \ - -.dockerenv dev/ lib/ mnt/ root/ srv/ usr/ -bin/ etc/ lib64/ opt/ run/ sys/ var/ + +.dockerenv dev/ lib/ mnt/ root/ srv/ usr/ +bin/ etc/ lib64/ opt/ run/ sys/ var/ boot/ home/ media/ proc/ sbin/ tmp/ jupyter-nbconvert python3-ipykernel \ - -.dockerenv dev/ lib/ mnt/ root/ srv/ usr/ -bin/ etc/ lib64/ opt/ run/ sys/ var/ + +.dockerenv dev/ lib/ mnt/ root/ srv/ usr/ +bin/ etc/ lib64/ opt/ run/ sys/ var/ boot/ home/ media/ proc/ sbin/ tmp/ #+end_example @@ -3702,360 +4300,360 @@ dpkg --list #+RESULTS: #+begin_example -Desired=Unknown/Install/Remove/Purge/Hold -| Status=Not/Inst/Conf-files/Unpacked/halF-conf/Half-inst/trig-aWait/Trig-pend -|/ Err?=(none)/Reinst-required (Status,Err: uppercase=bad) -||/ Name Version Architecture Description -+++-================-=============-=============-====================================== -ii adduser 3.115 all add and remove users and groups -ii apt 1.4.9 amd64 commandline package manager -ii base-files 9.9+deb9u9 amd64 Debian base system miscellaneous files -ii base-passwd 3.5.43 amd64 Debian base system master password and -ii bash 4.4-5 amd64 GNU Bourne Again SHell -ii binutils 2.30-5 amd64 GNU assembler, linker and binary utili -ii binutils-common: 2.30-5 amd64 Common files for the GNU assembler, li -ii binutils-x86-64- 2.30-5 amd64 GNU binary utilities, for x86-64-linux -ii blt 2.5.3+dfsg-4 amd64 graphics extension library for Tcl/Tk -ii bsdutils 1:2.29.2-1+de amd64 basic utilities from 4.4BSD-Lite -ii build-essential 12.4 amd64 Informational list of build-essential -ii bzip2 1.0.6-8.1 amd64 high-quality block-sorting file compre -ii ca-certificates 20170717 all Common CA certificates -ii coreutils 8.26-3 amd64 GNU core utilities -ii cpp 4:7.2.0-1d1 amd64 GNU C preprocessor (cpp) -ii cpp-7 7.3.0-5 amd64 GNU C preprocessor -ii dash 0.5.8-2.4 amd64 POSIX-compliant shell -ii dbus 1.12.6-2 amd64 simple interprocess messaging system ( -ii debconf 1.5.61 all Debian configuration management system -ii debian-archive-k 2017.5 all GnuPG archive keys of the Debian archi -ii debianutils 4.8.1.1 amd64 Miscellaneous utilities specific to De -ii dh-python 2.20170125 all Debian helper tools for packaging Pyth -ii diffutils 1:3.5-3 amd64 File comparison utilities -ii dirmngr 2.2.5-1 amd64 GNU privacy guard - network certificat -ii dpkg 1.18.25 amd64 Debian package management system -ii dpkg-dev 1.19.0.5 all Debian package development tools -ii e2fslibs:amd64 1.43.4-2 amd64 ext2/ext3/ext4 file system libraries -ii e2fsprogs 1.43.4-2 amd64 ext2/ext3/ext4 file system utilities -ii fakeroot 1.22-2 amd64 tool for simulating superuser privileg -ii file 1:5.32-2 amd64 Recognize the type of data in a file u -ii findutils 4.6.0+git+201 amd64 utilities for finding files--find, xar -ii fontconfig-confi 2.12.6-0.1 all generic font configuration library - c -ii fonts-lyx 2.2.3-5 all TrueType versions of some TeX fonts us -ii g++ 4:7.2.0-1d1 amd64 GNU C++ compiler -ii g++-7 7.3.0-5 amd64 GNU C++ compiler -ii gcc 4:7.2.0-1d1 amd64 GNU C compiler -ii gcc-6-base:amd64 6.3.0-18+deb9 amd64 GCC, the GNU Compiler Collection (base -ii gcc-7 7.3.0-5 amd64 GNU C compiler -ii gcc-7-base:amd64 7.3.0-5 amd64 GCC, the GNU Compiler Collection (base -ii gcc-8-base:amd64 8-20180218-1 amd64 GCC, the GNU Compiler Collection (base -ii gir1.2-glib-2.0: 1.54.1-4 amd64 Introspection data for GLib, GObject, -ii gnupg 2.2.5-1 amd64 GNU privacy guard - a free PGP replace -ii gnupg-l10n 2.2.5-1 all GNU privacy guard - localization files -ii gnupg-utils 2.2.5-1 amd64 GNU privacy guard - utility programs -ii gpg 2.2.5-1 amd64 GNU Privacy Guard -- minimalist public -ii gpg-agent 2.2.5-1 amd64 GNU privacy guard - cryptographic agen -ii gpg-wks-client 2.2.5-1 amd64 GNU privacy guard - Web Key Service cl -ii gpg-wks-server 2.2.5-1 amd64 GNU privacy guard - Web Key Service se -ii gpgconf 2.2.5-1 amd64 GNU privacy guard - core configuration -ii gpgsm 2.2.5-1 amd64 GNU privacy guard - S/MIME version -ii gpgv 2.2.5-1 amd64 GNU privacy guard - signature verifica -ii grep 2.27-2 amd64 GNU grep, egrep and fgrep -ii gzip 1.6-5+b1 amd64 GNU compression utilities -ii hostname 3.18+b1 amd64 utility to set/show the host name or d -ii init-system-help 1.48 all helper tools for all init systems -ii javascript-commo 11 all Base support for JavaScript library pa -ii jupyter-nbconver 5.3.1-1 all Jupyter notebook conversion (scripts) -ii krb5-locales 1.16-2 all internationalization support for MIT K -ii libacl1:amd64 2.2.52-3+b1 amd64 Access control list shared library -ii libaec0:amd64 1.0.2-1 amd64 Adaptive Entropy Coding library -ii libalgorithm-dif 1.19.03-1 all module to find differences between fil -ii libalgorithm-dif 0.04-5 amd64 module to find differences between fil -ii libalgorithm-mer 0.08-3 all Perl module for three-way merge of tex -ii libamd2:amd64 1:5.1.2-2 amd64 approximate minimum degree ordering li -ii libapparmor1:amd 2.12-3 amd64 changehat AppArmor library -ii libapt-pkg5.0:am 1.4.9 amd64 package management runtime library -ii libasan4:amd64 7.3.0-5 amd64 AddressSanitizer -- a fast memory erro -ii libassuan0:amd64 2.5.1-2 amd64 IPC library for the GnuPG components -ii libatomic1:amd64 8-20180218-1 amd64 support library providing __atomic bui -ii libattr1:amd64 1:2.4.47-2+b2 amd64 Extended attribute shared library -ii libaudit-common 1:2.6.7-2 all Dynamic library for security auditing -ii libaudit1:amd64 1:2.6.7-2 amd64 Dynamic library for security auditing -ii libbinutils:amd6 2.30-5 amd64 GNU binary utilities (private shared l -ii libblas3:amd64 3.7.1-4 amd64 Basic Linear Algebra Reference impleme -ii libblkid1:amd64 2.29.2-1+deb9 amd64 block device ID library -ii libblosc1 1.11.1+ds2-3 amd64 high performance meta-compressor optim -ii libbsd0:amd64 0.8.7-1 amd64 utility functions from BSD systems - s -ii libbz2-1.0:amd64 1.0.6-8.1 amd64 high-quality block-sorting file compre -ii libc-bin 2.27-1 amd64 GNU C Library: Binaries -ii libc-dev-bin 2.27-1 amd64 GNU C Library: Development binaries -ii libc6:amd64 2.27-1 amd64 GNU C Library: Shared libraries -ii libc6-dev:amd64 2.27-1 amd64 GNU C Library: Development Libraries a -ii libcamd2:amd64 1:5.1.2-2 amd64 symmetric approximate minimum degree l -ii libcap-ng0:amd64 0.7.7-3+b1 amd64 An alternate POSIX capabilities librar -ii libcc1-0:amd64 8-20180218-1 amd64 GCC cc1 plugin for GDB -ii libccolamd2:amd6 1:5.1.2-2 amd64 constrained column approximate library -ii libcholmod3:amd6 1:5.1.2-2 amd64 sparse Cholesky factorization library -ii libcilkrts5:amd6 7.3.0-5 amd64 Intel Cilk Plus language extensions (r -ii libcolamd2:amd64 1:5.1.2-2 amd64 column approximate minimum degree orde -ii libcomerr2:amd64 1.43.4-2 amd64 common error description library -ii libdb5.3:amd64 5.3.28-12+deb amd64 Berkeley v5.3 Database Libraries [runt -ii libdbus-1-3:amd6 1.12.6-2 amd64 simple interprocess messaging system ( -ii libdebconfclient 0.227 amd64 Debian Configuration Management System -ii libdpkg-perl 1.19.0.5 all Dpkg perl modules -ii libdsdp-5.8gf 5.8-9.4 amd64 Software for Semidefinite Programming -ii libexpat1:amd64 2.2.5-3 amd64 XML parsing C library - runtime librar -ii libexpat1-dev:am 2.2.5-3 amd64 XML parsing C library - development ki -ii libfakeroot:amd6 1.22-2 amd64 tool for simulating superuser privileg -ii libfdisk1:amd64 2.29.2-1+deb9 amd64 fdisk partitioning library -ii libffi6:amd64 3.2.1-8 amd64 Foreign Function Interface library run -ii libfftw3-double3 3.3.7-1 amd64 Library for computing Fast Fourier Tra -ii libfile-fcntlloc 0.22-3+b4 amd64 Perl module for file locking with fcnt -ii libfontconfig1:a 2.12.6-0.1 amd64 generic font configuration library - r -ii libfreetype6:amd 2.8.1-2 amd64 FreeType 2 font engine, shared library -ii libgcc-7-dev:amd 7.3.0-5 amd64 GCC support library (development files -ii libgcc1:amd64 1:8-20180218- amd64 GCC support library -ii libgcrypt20:amd6 1.8.1-4 amd64 LGPL Crypto library - runtime library -ii libgdbm-compat4: 1.14.1-4 amd64 GNU dbm database routines (legacy supp -ii libgdbm5:amd64 1.14.1-4 amd64 GNU dbm database routines (runtime ver -ii libgfortran4:amd 7.3.0-5 amd64 Runtime library for GNU Fortran applic -ii libgirepository- 1.54.1-4 amd64 Library for handling GObject introspec -ii libglib2.0-0:amd 2.54.3-2 amd64 GLib library of C routines -ii libglib2.0-data 2.54.3-2 all Common files for GLib library -ii libglpk40:amd64 4.65-2 amd64 linear programming kit with integer (M -ii libgmp10:amd64 2:6.1.2+dfsg- amd64 Multiprecision arithmetic library -ii libgnutls30:amd6 3.5.18-1 amd64 GNU TLS library - main runtime library -ii libgomp1:amd64 8-20180218-1 amd64 GCC OpenMP (GOMP) support library -ii libgpg-error0:am 1.26-2 amd64 library for common error values and me -ii libgsl23:amd64 2.4+dfsg-6 amd64 GNU Scientific Library (GSL) -- librar -ii libgslcblas0:amd 2.4+dfsg-6 amd64 GNU Scientific Library (GSL) -- blas l -ii libgssapi-krb5-2 1.16-2 amd64 MIT Kerberos runtime libraries - krb5 -ii libhdf5-100:amd6 1.10.0-patch1 amd64 Hierarchical Data Format 5 (HDF5) - ru -ii libhogweed4:amd6 3.4-1 amd64 low level cryptographic library (publi -ii libicu57:amd64 57.1-8 amd64 International Components for Unicode -ii libidn2-0:amd64 2.0.4-1.1 amd64 Internationalized domain names (IDNA20 -ii libisl15:amd64 0.18-1 amd64 manipulating sets and relations of int -ii libitm1:amd64 8-20180218-1 amd64 GNU Transactional Memory Library -ii libjbig0:amd64 2.1-3.1+b2 amd64 JBIGkit libraries -ii libjpeg62-turbo: 1:1.5.2-2+b1 amd64 libjpeg-turbo JPEG runtime library -ii libjs-jquery 3.2.1-1 all JavaScript library for dynamic web app -ii libjs-jquery-ui 1.12.1+dfsg-5 all JavaScript UI library for dynamic web -ii libk5crypto3:amd 1.16-2 amd64 MIT Kerberos runtime libraries - Crypt -ii libkeyutils1:amd 1.5.9-9.2 amd64 Linux Key Management Utilities (librar -ii libkrb5-3:amd64 1.16-2 amd64 MIT Kerberos runtime libraries -ii libkrb5support0: 1.16-2 amd64 MIT Kerberos runtime libraries - Suppo -ii libksba8:amd64 1.3.5-2 amd64 X.509 and CMS support library -ii liblapack3:amd64 3.7.1-4 amd64 Library of linear algebra routines 3 - -ii liblcms2-2:amd64 2.9-1 amd64 Little CMS 2 color management library -ii libldap-2.4-2:am 2.4.45+dfsg-1 amd64 OpenLDAP libraries -ii libldap-common 2.4.45+dfsg-1 all OpenLDAP common files for libraries -ii liblocale-gettex 1.07-3+b3 amd64 module using libc functions for intern -ii liblsan0:amd64 8-20180218-1 amd64 LeakSanitizer -- a memory leak detecto -ii libltdl7:amd64 2.4.6-2 amd64 System independent dlopen wrapper for -ii liblua5.1-0:amd6 5.1.5-8.1+b2 amd64 Shared library for the Lua interpreter -ii libluajit-5.1-2: 2.1.0~beta3+d amd64 Just in time compiler for Lua - librar -ii libluajit-5.1-co 2.1.0~beta3+d all Just in time compiler for Lua - common -ii liblz4-1:amd64 0.0~r131-2+b1 amd64 Fast LZ compression algorithm library -ii liblzma5:amd64 5.2.2-1.2+b1 amd64 XZ-format compression library -ii liblzo2-2:amd64 2.08-1.2+b2 amd64 data compression library -ii libmagic-mgc 1:5.32-2 amd64 File type determination library using -ii libmagic1:amd64 1:5.32-2 amd64 Recognize the type of data in a file u -ii libmetis5:amd64 5.1.0.dfsg-5+ amd64 Serial Graph Partitioning and Fill-red -ii libmount1:amd64 2.29.2-1+deb9 amd64 device mounting library -ii libmpc3:amd64 1.1.0-1 amd64 multiple precision complex floating-po -ii libmpdec2:amd64 2.4.2-1 amd64 library for decimal floating point ari -ii libmpfr6:amd64 4.0.0-7 amd64 multiple precision floating-point comp -ii libmpx2:amd64 8-20180218-1 amd64 Intel memory protection extensions (ru -ii libncursesw5:amd 6.0+20161126- amd64 shared libraries for terminal handling -ii libnettle6:amd64 3.4-1 amd64 low level cryptographic library (symme -ii libnorm1:amd64 1.5r6+dfsg1-6 amd64 NACK-Oriented Reliable Multicast (NORM -ii libnpth0:amd64 1.5-3 amd64 replacement for GNU Pth using system t -ii libp11-kit0:amd6 0.23.9-2 amd64 library for loading and coordinating a -ii libpam-modules:a 1.1.8-3.6 amd64 Pluggable Authentication Modules for P -ii libpam-modules-b 1.1.8-3.6 amd64 Pluggable Authentication Modules for P -ii libpam-runtime 1.1.8-3.6 all Runtime support for the PAM library -ii libpam0g:amd64 1.1.8-3.6 amd64 Pluggable Authentication Modules libra -ii libpcre3:amd64 2:8.39-3 amd64 Old Perl 5 Compatible Regular Expressi -ii libperl5.26:amd6 5.26.1-5 amd64 shared Perl library -ii libpgm-5.2-0:amd 5.2.122~dfsg- amd64 OpenPGM shared library -ii libpng16-16:amd6 1.6.34-1 amd64 PNG library - runtime (version 1.6) -ii libpython-stdlib 2.7.14-4 amd64 interactive high-level object-oriented -ii libpython2.7-min 2.7.14-6 amd64 Minimal subset of the Python language -ii libpython2.7-std 2.7.14-6 amd64 Interactive high-level object-oriented -ii libpython3-dev:a 3.6.4-1 amd64 header files and a static library for -ii libpython3-stdli 3.6.4-1 amd64 interactive high-level object-oriented -ii libpython3.6:amd 3.6.4-4 amd64 Shared Python runtime library (version -ii libpython3.6-dev 3.6.4-4 amd64 Header files and a static library for -ii libpython3.6-min 3.6.4-4 amd64 Minimal subset of the Python language -ii libpython3.6-std 3.6.4-4 amd64 Interactive high-level object-oriented -ii libquadmath0:amd 8-20180218-1 amd64 GCC Quad-Precision Math Library -ii libreadline7:amd 7.0-3 amd64 GNU readline and history libraries, ru -ii libsasl2-2:amd64 2.1.27~101-g0 amd64 Cyrus SASL - authentication abstractio -ii libsasl2-modules 2.1.27~101-g0 amd64 Cyrus SASL - pluggable authentication -ii libsasl2-modules 2.1.27~101-g0 amd64 Cyrus SASL - pluggable authentication -ii libselinux1:amd6 2.6-3+b3 amd64 SELinux runtime shared libraries -ii libsemanage-comm 2.6-2 all Common files for SELinux policy manage -ii libsemanage1:amd 2.6-2 amd64 SELinux policy management library -ii libsepol1:amd64 2.6-2 amd64 SELinux library for manipulating binar -ii libsmartcols1:am 2.29.2-1+deb9 amd64 smart column output alignment library -ii libsnappy1v5:amd 1.1.7-1 amd64 fast compression/decompression library -ii libsodium23:amd6 1.0.16-2 amd64 Network communication, cryptography an -ii libsqlite3-0:amd 3.22.0-1 amd64 SQLite 3 shared library -ii libss2:amd64 1.43.4-2 amd64 command-line interface parsing library -ii libssl1.1:amd64 1.1.0g-2 amd64 Secure Sockets Layer toolkit - shared -ii libstdc++-7-dev: 7.3.0-5 amd64 GNU Standard C++ Library v3 (developme -ii libstdc++6:amd64 8-20180218-1 amd64 GNU Standard C++ Library v3 -ii libsuitesparseco 1:5.1.2-2 amd64 configuration routines for all SuiteSp -ii libsystemd0:amd6 232-25+deb9u1 amd64 systemd utility library -ii libsz2:amd64 1.0.2-1 amd64 Adaptive Entropy Coding library - SZIP -ii libtasn1-6:amd64 4.13-2 amd64 Manage ASN.1 structures (runtime) -ii libtcl8.6:amd64 8.6.8+dfsg-3 amd64 Tcl (the Tool Command Language) v8.6 - -ii libtiff5:amd64 4.0.9-4 amd64 Tag Image File Format (TIFF) library -ii libtinfo5:amd64 6.0+20161126- amd64 shared low-level terminfo library for -ii libtk8.6:amd64 8.6.8-3 amd64 Tk toolkit for Tcl and X11 v8.6 - run- -ii libtsan0:amd64 8-20180218-1 amd64 ThreadSanitizer -- a Valgrind-based de -ii libubsan0:amd64 7.3.0-5 amd64 UBSan -- undefined behaviour sanitizer -ii libudev1:amd64 232-25+deb9u1 amd64 libudev shared library -ii libumfpack5:amd6 1:5.1.2-2 amd64 sparse LU factorization library -ii libunistring2:am 0.9.8-1 amd64 Unicode string library for C -ii libustr-1.0-1:am 1.0.4-6 amd64 Micro string library: shared library -ii libuuid1:amd64 2.29.2-1+deb9 amd64 Universally Unique ID library -ii libwebp6:amd64 0.6.1-2 amd64 Lossy compression of digital photograp -ii libwebpdemux2:am 0.6.1-2 amd64 Lossy compression of digital photograp -ii libwebpmux3:amd6 0.6.1-2 amd64 Lossy compression of digital photograp -ii libx11-6:amd64 2:1.6.4-3 amd64 X11 client-side library -ii libx11-data 2:1.6.4-3 all X11 client-side library -ii libxau6:amd64 1:1.0.8-1+b2 amd64 X11 authorisation library -ii libxcb1:amd64 1.12-1 amd64 X C Binding -ii libxdmcp6:amd64 1:1.1.2-3 amd64 X11 Display Manager Control Protocol l -ii libxext6:amd64 2:1.3.3-1+b2 amd64 X11 miscellaneous extension library -ii libxft2:amd64 2.3.2-1+b2 amd64 FreeType-based font drawing library fo -ii libxml2:amd64 2.9.4+dfsg1-6 amd64 GNOME XML library -ii libxrender1:amd6 1:0.9.10-1 amd64 X Rendering Extension client library -ii libxslt1.1:amd64 1.1.29-5 amd64 XSLT 1.0 processing library - runtime -ii libxss1:amd64 1:1.2.2-1+b2 amd64 X11 Screen Saver extension library -ii libyaml-0-2:amd6 0.1.7-2 amd64 Fast YAML 1.1 parser and emitter libra -ii libzmq5:amd64 4.2.3-1+b1 amd64 lightweight messaging kernel (shared l -ii libzstd1 1.3.3+dfsg-1 amd64 fast lossless compression algorithm -ii linux-libc-dev:a 4.15.4-1 amd64 Linux support headers for userspace de -ii login 1:4.4-4.1 amd64 system login tools -ii lsb-base 9.20161125 all Linux Standard Base init script functi -ii make 4.1-9.1 amd64 utility for directing compilation -ii manpages 4.15-1 all Manual pages about using a GNU/Linux s -ii manpages-dev 4.15-1 all Manual pages about using GNU/Linux for -ii mawk 1.3.3-17+b3 amd64 a pattern scanning and text processing -ii mime-support 3.60 all MIME files 'mime.types' & 'mailcap', a -ii mount 2.29.2-1+deb9 amd64 tools for mounting and manipulating fi -ii multiarch-suppor 2.24-11+deb9u amd64 Transitional package to ensure multiar -ii ncurses-base 6.0+20161126- all basic terminal type definitions -ii ncurses-bin 6.0+20161126- amd64 terminal-related programs and man page -ii netbase 5.4 all Basic TCP/IP networking system -ii openssl 1.1.0g-2 amd64 Secure Sockets Layer toolkit - cryptog -ii pandoc 1.19.2.4~dfsg amd64 general markup converter -ii pandoc-data 1.19.2.4~dfsg all general markup converter - data files -ii passwd 1:4.4-4.1 amd64 change and administer password and gro -ii patch 2.7.6-1 amd64 Apply a diff file to an original -ii perl 5.26.1-5 amd64 Larry Wall's Practical Extraction and -ii perl-base 5.26.1-5 amd64 minimal Perl system -ii perl-modules-5.2 5.26.1-5 all Core Perl modules -ii pinentry-curses 1.1.0-1 amd64 curses-based PIN or pass-phrase entry -ii python 2.7.14-4 amd64 interactive high-level object-oriented -ii python-matplotli 2.1.1-2 all Python based plotting system (data pac -ii python-minimal 2.7.14-4 amd64 minimal subset of the Python language -ii python-pip-whl 9.0.1-2 all Python package installer -ii python-tables-da 3.4.2-4 all hierarchical database for Python based -ii python2.7 2.7.14-6 amd64 Interactive high-level object-oriented -ii python2.7-minima 2.7.14-6 amd64 Minimal subset of the Python language -ii python3 3.6.4-1 amd64 interactive high-level object-oriented -ii python3-asn1cryp 0.24.0-1 all Fast ASN.1 parser and serializer (Pyth -ii python3-bleach 2.1.3-1 all whitelist-based HTML-sanitizing librar -ii python3-bs4 4.6.0-1 all error-tolerant HTML parser for Python -ii python3-cffi-bac 1.11.5-1 amd64 Foreign Function Interface for Python -ii python3-chardet 3.0.4-1 all universal character encoding detector -ii python3-crypto 2.6.1-8 amd64 cryptographic algorithms and protocols -ii python3-cryptogr 2.1.4-1 amd64 Python library exposing cryptographic -ii python3-cvxopt 1.1.9+dfsg-2+ amd64 Python3 package for convex optimizatio -ii python3-cycler 0.10.0-1 all composable kwarg iterator (Python 3) -ii python3-dateutil 2.6.1-1 all powerful extensions to the standard Py -ii python3-dbus 1.2.6-1 amd64 simple interprocess messaging system ( -ii python3-decorato 4.1.2-1 all simplify usage of Python decorators by -ii python3-dev 3.6.4-1 amd64 header files and a static library for -ii python3-distutil 3.6.4-4 all distutils package for Python 3.x -ii python3-entrypoi 0.2.3-1 all Discover and load entry points from in -ii python3-gi 3.26.1-2 amd64 Python 3 bindings for gobject-introspe -ii python3-html5lib 0.999999999-1 all HTML parser/tokenizer based on the WHA -ii python3-idna 2.6-1 all Python IDNA2008 (RFC 5891) handling (P -ii python3-ipykerne 4.8.2-2 all IPython kernel for Jupyter (Python 3) -ii python3-ipython 5.5.0-1 all Enhanced interactive Python shell (Pyt -ii python3-ipython- 0.2.0-1 all IPython vestigial utilities for Python -ii python3-jinja2 2.10-1 all small but fast and easy to use stand-a -ii python3-joblib 0.11-1 all tools to provide lightweight pipelinin -ii python3-jsonsche 2.6.0-2 all An(other) implementation of JSON Schem -ii python3-jupyter- 5.2.2-1 all Jupyter protocol client APIs (Python 3 -ii python3-jupyter- 4.4.0-2 all Core common functionality of Jupyter p -ii python3-keyring 10.6.0-1 all store and access your passwords safely -ii python3-keyrings 3.0-1 all alternate backend implementations for -ii python3-lib2to3 3.6.4-4 all Interactive high-level object-oriented -ii python3-lxml 4.1.0-1 amd64 pythonic binding for the libxml2 and l -ii python3-markupsa 1.0-1+b1 amd64 HTML/XHTML/XML string library for Pyth -ii python3-matplotl 2.1.1-2 amd64 Python based plotting system in a styl -ii python3-minimal 3.6.4-1 amd64 minimal subset of the Python language -ii python3-mistune 0.8.3-2 all Markdown parser for Python 3 -ii python3-nbconver 5.3.1-1 all Jupyter notebook conversion (Python 3) -ii python3-nbformat 4.4.0-1 all Jupyter notebook format (Python 3) -ii python3-numexpr 2.6.4-1 amd64 Fast numerical array expression evalua -ii python3-numpy 1:1.13.3-2 amd64 Fast array facility to the Python 3 la -ii python3-olefile 0.45.1-1 all Python module to read/write MS OLE2 fi -ii python3-pandas 0.20.3-11 all data structures for "relational" or "l -ii python3-pandas-l 0.20.3-11 amd64 low-level implementations and bindings -ii python3-pandocfi 1.4.2-1 all python3 bindings for Pandoc's filters -ii python3-patsy 0.4.1+git34-g all statistical models in Python using sym -ii python3-pexpect 4.2.1-1 all Python 3 module for automating interac -ii python3-picklesh 0.7.4-2 all File system based database that uses P -ii python3-pil:amd6 4.3.0-2 amd64 Python Imaging Library (Python3) -ii python3-pip 9.0.1-2 all Python package installer -ii python3-pkg-reso 38.4.0-1 all Package Discovery and Resource Access -ii python3-prompt-t 1.0.15-1 all library for building interactive comma -ii python3-ptyproce 0.5.2-1 all Run a subprocess in a pseudo terminal -ii python3-py 1.5.2-1 all Advanced Python development support li -ii python3-pygments 2.2.0+dfsg-1 all syntax highlighting package written in -ii python3-pyparsin 2.2.0+dfsg1-2 all alternative to creating and executing -ii python3-pytest 3.2.5-2 all Simple, powerful testing in Python3 -ii python3-scipy 0.19.1-2 amd64 scientific tools for Python 3 -ii python3-secretst 2.3.1-2 all Python module for storing secrets - Py -ii python3-setuptoo 38.4.0-1 all Python3 Distutils Enhancements -ii python3-simplege 0.8.1-1 all simple generic functions for Python3 -ii python3-simplejs 3.13.2-1 amd64 simple, fast, extensible JSON encoder/ -ii python3-six 1.11.0-2 all Python 2 and 3 compatibility library ( -ii python3-statsmod 0.8.0-6 all Python3 module for the estimation of s -ii python3-statsmod 0.8.0-6 amd64 Python3 low-level implementations and -ii python3-tables 3.4.2-4 all hierarchical database for Python3 base -ii python3-tables-l 3.4.2-4 amd64 hierarchical database for Python3 base -ii python3-testpath 0.3.1+dfsg-3 all Utilities for Python 3 code working wi -ii python3-tk:amd64 3.6.4-4 amd64 Tkinter - Writing Tk applications with -ii python3-tornado 4.5.3-1 amd64 scalable, non-blocking web server and -ii python3-traitlet 4.3.2-1 all Lightweight Traits-like package for Py -ii python3-tz 2018.3-2 all Python3 version of the Olson timezone -ii python3-wcwidth 0.1.7+dfsg1-1 all determine printable width of a string -ii python3-webencod 0.5-2 all Python implementation of the WHATWG En -ii python3-wheel 0.30.0-0.2 all built-package format for Python -ii python3-xdg 0.25-4 all Python 3 library to access freedesktop -ii python3-zmq 16.0.2-2+b1 amd64 Python3 bindings for 0MQ library -ii python3.6 3.6.4-4 amd64 Interactive high-level object-oriented -ii python3.6-dev 3.6.4-4 amd64 Header files and a static library for -ii python3.6-minima 3.6.4-4 amd64 Minimal subset of the Python language -ii readline-common 7.0-3 all GNU readline and history libraries, co -ii sed 4.4-1 amd64 GNU stream editor for filtering/transf -ii sensible-utils 0.0.9+deb9u1 all Utilities for sensible alternative sel -ii shared-mime-info 1.9-2 amd64 FreeDesktop.org shared MIME database a -ii sysvinit-utils 2.88dsf-59.9 amd64 System-V-like utilities -ii tar 1.29b-1.1 amd64 GNU version of the tar archiving utili -ii tk8.6-blt2.5 2.5.3+dfsg-4 amd64 graphics extension library for Tcl/Tk -ii ttf-bitstream-ve 1.10-8 all The Bitstream Vera family of free True -ii tzdata 2019a-0+deb9u all time zone and daylight-saving time dat -ii ucf 3.0038 all Update Configuration File(s): preserve -ii util-linux 2.29.2-1+deb9 amd64 miscellaneous system utilities -ii x11-common 1:7.7+19 all X Window System (X.Org) infrastructure -ii xdg-user-dirs 0.16-1 amd64 tool to manage well known user directo -ii xz-utils 5.2.2-1.3 amd64 XZ-format compression utilities +Desired=Unknown/Install/Remove/Purge/Hold +| Status=Not/Inst/Conf-files/Unpacked/halF-conf/Half-inst/trig-aWait/Trig-pend +|/ Err?=(none)/Reinst-required (Status,Err: uppercase=bad) +||/ Name Version Architecture Description ++++-================-=============-=============-====================================== +ii adduser 3.115 all add and remove users and groups +ii apt 1.4.9 amd64 commandline package manager +ii base-files 9.9+deb9u9 amd64 Debian base system miscellaneous files +ii base-passwd 3.5.43 amd64 Debian base system master password and +ii bash 4.4-5 amd64 GNU Bourne Again SHell +ii binutils 2.30-5 amd64 GNU assembler, linker and binary utili +ii binutils-common: 2.30-5 amd64 Common files for the GNU assembler, li +ii binutils-x86-64- 2.30-5 amd64 GNU binary utilities, for x86-64-linux +ii blt 2.5.3+dfsg-4 amd64 graphics extension library for Tcl/Tk +ii bsdutils 1:2.29.2-1+de amd64 basic utilities from 4.4BSD-Lite +ii build-essential 12.4 amd64 Informational list of build-essential +ii bzip2 1.0.6-8.1 amd64 high-quality block-sorting file compre +ii ca-certificates 20170717 all Common CA certificates +ii coreutils 8.26-3 amd64 GNU core utilities +ii cpp 4:7.2.0-1d1 amd64 GNU C preprocessor (cpp) +ii cpp-7 7.3.0-5 amd64 GNU C preprocessor +ii dash 0.5.8-2.4 amd64 POSIX-compliant shell +ii dbus 1.12.6-2 amd64 simple interprocess messaging system ( +ii debconf 1.5.61 all Debian configuration management system +ii debian-archive-k 2017.5 all GnuPG archive keys of the Debian archi +ii debianutils 4.8.1.1 amd64 Miscellaneous utilities specific to De +ii dh-python 2.20170125 all Debian helper tools for packaging Pyth +ii diffutils 1:3.5-3 amd64 File comparison utilities +ii dirmngr 2.2.5-1 amd64 GNU privacy guard - network certificat +ii dpkg 1.18.25 amd64 Debian package management system +ii dpkg-dev 1.19.0.5 all Debian package development tools +ii e2fslibs:amd64 1.43.4-2 amd64 ext2/ext3/ext4 file system libraries +ii e2fsprogs 1.43.4-2 amd64 ext2/ext3/ext4 file system utilities +ii fakeroot 1.22-2 amd64 tool for simulating superuser privileg +ii file 1:5.32-2 amd64 Recognize the type of data in a file u +ii findutils 4.6.0+git+201 amd64 utilities for finding files--find, xar +ii fontconfig-confi 2.12.6-0.1 all generic font configuration library - c +ii fonts-lyx 2.2.3-5 all TrueType versions of some TeX fonts us +ii g++ 4:7.2.0-1d1 amd64 GNU C++ compiler +ii g++-7 7.3.0-5 amd64 GNU C++ compiler +ii gcc 4:7.2.0-1d1 amd64 GNU C compiler +ii gcc-6-base:amd64 6.3.0-18+deb9 amd64 GCC, the GNU Compiler Collection (base +ii gcc-7 7.3.0-5 amd64 GNU C compiler +ii gcc-7-base:amd64 7.3.0-5 amd64 GCC, the GNU Compiler Collection (base +ii gcc-8-base:amd64 8-20180218-1 amd64 GCC, the GNU Compiler Collection (base +ii gir1.2-glib-2.0: 1.54.1-4 amd64 Introspection data for GLib, GObject, +ii gnupg 2.2.5-1 amd64 GNU privacy guard - a free PGP replace +ii gnupg-l10n 2.2.5-1 all GNU privacy guard - localization files +ii gnupg-utils 2.2.5-1 amd64 GNU privacy guard - utility programs +ii gpg 2.2.5-1 amd64 GNU Privacy Guard -- minimalist public +ii gpg-agent 2.2.5-1 amd64 GNU privacy guard - cryptographic agen +ii gpg-wks-client 2.2.5-1 amd64 GNU privacy guard - Web Key Service cl +ii gpg-wks-server 2.2.5-1 amd64 GNU privacy guard - Web Key Service se +ii gpgconf 2.2.5-1 amd64 GNU privacy guard - core configuration +ii gpgsm 2.2.5-1 amd64 GNU privacy guard - S/MIME version +ii gpgv 2.2.5-1 amd64 GNU privacy guard - signature verifica +ii grep 2.27-2 amd64 GNU grep, egrep and fgrep +ii gzip 1.6-5+b1 amd64 GNU compression utilities +ii hostname 3.18+b1 amd64 utility to set/show the host name or d +ii init-system-help 1.48 all helper tools for all init systems +ii javascript-commo 11 all Base support for JavaScript library pa +ii jupyter-nbconver 5.3.1-1 all Jupyter notebook conversion (scripts) +ii krb5-locales 1.16-2 all internationalization support for MIT K +ii libacl1:amd64 2.2.52-3+b1 amd64 Access control list shared library +ii libaec0:amd64 1.0.2-1 amd64 Adaptive Entropy Coding library +ii libalgorithm-dif 1.19.03-1 all module to find differences between fil +ii libalgorithm-dif 0.04-5 amd64 module to find differences between fil +ii libalgorithm-mer 0.08-3 all Perl module for three-way merge of tex +ii libamd2:amd64 1:5.1.2-2 amd64 approximate minimum degree ordering li +ii libapparmor1:amd 2.12-3 amd64 changehat AppArmor library +ii libapt-pkg5.0:am 1.4.9 amd64 package management runtime library +ii libasan4:amd64 7.3.0-5 amd64 AddressSanitizer -- a fast memory erro +ii libassuan0:amd64 2.5.1-2 amd64 IPC library for the GnuPG components +ii libatomic1:amd64 8-20180218-1 amd64 support library providing __atomic bui +ii libattr1:amd64 1:2.4.47-2+b2 amd64 Extended attribute shared library +ii libaudit-common 1:2.6.7-2 all Dynamic library for security auditing +ii libaudit1:amd64 1:2.6.7-2 amd64 Dynamic library for security auditing +ii libbinutils:amd6 2.30-5 amd64 GNU binary utilities (private shared l +ii libblas3:amd64 3.7.1-4 amd64 Basic Linear Algebra Reference impleme +ii libblkid1:amd64 2.29.2-1+deb9 amd64 block device ID library +ii libblosc1 1.11.1+ds2-3 amd64 high performance meta-compressor optim +ii libbsd0:amd64 0.8.7-1 amd64 utility functions from BSD systems - s +ii libbz2-1.0:amd64 1.0.6-8.1 amd64 high-quality block-sorting file compre +ii libc-bin 2.27-1 amd64 GNU C Library: Binaries +ii libc-dev-bin 2.27-1 amd64 GNU C Library: Development binaries +ii libc6:amd64 2.27-1 amd64 GNU C Library: Shared libraries +ii libc6-dev:amd64 2.27-1 amd64 GNU C Library: Development Libraries a +ii libcamd2:amd64 1:5.1.2-2 amd64 symmetric approximate minimum degree l +ii libcap-ng0:amd64 0.7.7-3+b1 amd64 An alternate POSIX capabilities librar +ii libcc1-0:amd64 8-20180218-1 amd64 GCC cc1 plugin for GDB +ii libccolamd2:amd6 1:5.1.2-2 amd64 constrained column approximate library +ii libcholmod3:amd6 1:5.1.2-2 amd64 sparse Cholesky factorization library +ii libcilkrts5:amd6 7.3.0-5 amd64 Intel Cilk Plus language extensions (r +ii libcolamd2:amd64 1:5.1.2-2 amd64 column approximate minimum degree orde +ii libcomerr2:amd64 1.43.4-2 amd64 common error description library +ii libdb5.3:amd64 5.3.28-12+deb amd64 Berkeley v5.3 Database Libraries [runt +ii libdbus-1-3:amd6 1.12.6-2 amd64 simple interprocess messaging system ( +ii libdebconfclient 0.227 amd64 Debian Configuration Management System +ii libdpkg-perl 1.19.0.5 all Dpkg perl modules +ii libdsdp-5.8gf 5.8-9.4 amd64 Software for Semidefinite Programming +ii libexpat1:amd64 2.2.5-3 amd64 XML parsing C library - runtime librar +ii libexpat1-dev:am 2.2.5-3 amd64 XML parsing C library - development ki +ii libfakeroot:amd6 1.22-2 amd64 tool for simulating superuser privileg +ii libfdisk1:amd64 2.29.2-1+deb9 amd64 fdisk partitioning library +ii libffi6:amd64 3.2.1-8 amd64 Foreign Function Interface library run +ii libfftw3-double3 3.3.7-1 amd64 Library for computing Fast Fourier Tra +ii libfile-fcntlloc 0.22-3+b4 amd64 Perl module for file locking with fcnt +ii libfontconfig1:a 2.12.6-0.1 amd64 generic font configuration library - r +ii libfreetype6:amd 2.8.1-2 amd64 FreeType 2 font engine, shared library +ii libgcc-7-dev:amd 7.3.0-5 amd64 GCC support library (development files +ii libgcc1:amd64 1:8-20180218- amd64 GCC support library +ii libgcrypt20:amd6 1.8.1-4 amd64 LGPL Crypto library - runtime library +ii libgdbm-compat4: 1.14.1-4 amd64 GNU dbm database routines (legacy supp +ii libgdbm5:amd64 1.14.1-4 amd64 GNU dbm database routines (runtime ver +ii libgfortran4:amd 7.3.0-5 amd64 Runtime library for GNU Fortran applic +ii libgirepository- 1.54.1-4 amd64 Library for handling GObject introspec +ii libglib2.0-0:amd 2.54.3-2 amd64 GLib library of C routines +ii libglib2.0-data 2.54.3-2 all Common files for GLib library +ii libglpk40:amd64 4.65-2 amd64 linear programming kit with integer (M +ii libgmp10:amd64 2:6.1.2+dfsg- amd64 Multiprecision arithmetic library +ii libgnutls30:amd6 3.5.18-1 amd64 GNU TLS library - main runtime library +ii libgomp1:amd64 8-20180218-1 amd64 GCC OpenMP (GOMP) support library +ii libgpg-error0:am 1.26-2 amd64 library for common error values and me +ii libgsl23:amd64 2.4+dfsg-6 amd64 GNU Scientific Library (GSL) -- librar +ii libgslcblas0:amd 2.4+dfsg-6 amd64 GNU Scientific Library (GSL) -- blas l +ii libgssapi-krb5-2 1.16-2 amd64 MIT Kerberos runtime libraries - krb5 +ii libhdf5-100:amd6 1.10.0-patch1 amd64 Hierarchical Data Format 5 (HDF5) - ru +ii libhogweed4:amd6 3.4-1 amd64 low level cryptographic library (publi +ii libicu57:amd64 57.1-8 amd64 International Components for Unicode +ii libidn2-0:amd64 2.0.4-1.1 amd64 Internationalized domain names (IDNA20 +ii libisl15:amd64 0.18-1 amd64 manipulating sets and relations of int +ii libitm1:amd64 8-20180218-1 amd64 GNU Transactional Memory Library +ii libjbig0:amd64 2.1-3.1+b2 amd64 JBIGkit libraries +ii libjpeg62-turbo: 1:1.5.2-2+b1 amd64 libjpeg-turbo JPEG runtime library +ii libjs-jquery 3.2.1-1 all JavaScript library for dynamic web app +ii libjs-jquery-ui 1.12.1+dfsg-5 all JavaScript UI library for dynamic web +ii libk5crypto3:amd 1.16-2 amd64 MIT Kerberos runtime libraries - Crypt +ii libkeyutils1:amd 1.5.9-9.2 amd64 Linux Key Management Utilities (librar +ii libkrb5-3:amd64 1.16-2 amd64 MIT Kerberos runtime libraries +ii libkrb5support0: 1.16-2 amd64 MIT Kerberos runtime libraries - Suppo +ii libksba8:amd64 1.3.5-2 amd64 X.509 and CMS support library +ii liblapack3:amd64 3.7.1-4 amd64 Library of linear algebra routines 3 - +ii liblcms2-2:amd64 2.9-1 amd64 Little CMS 2 color management library +ii libldap-2.4-2:am 2.4.45+dfsg-1 amd64 OpenLDAP libraries +ii libldap-common 2.4.45+dfsg-1 all OpenLDAP common files for libraries +ii liblocale-gettex 1.07-3+b3 amd64 module using libc functions for intern +ii liblsan0:amd64 8-20180218-1 amd64 LeakSanitizer -- a memory leak detecto +ii libltdl7:amd64 2.4.6-2 amd64 System independent dlopen wrapper for +ii liblua5.1-0:amd6 5.1.5-8.1+b2 amd64 Shared library for the Lua interpreter +ii libluajit-5.1-2: 2.1.0~beta3+d amd64 Just in time compiler for Lua - librar +ii libluajit-5.1-co 2.1.0~beta3+d all Just in time compiler for Lua - common +ii liblz4-1:amd64 0.0~r131-2+b1 amd64 Fast LZ compression algorithm library +ii liblzma5:amd64 5.2.2-1.2+b1 amd64 XZ-format compression library +ii liblzo2-2:amd64 2.08-1.2+b2 amd64 data compression library +ii libmagic-mgc 1:5.32-2 amd64 File type determination library using +ii libmagic1:amd64 1:5.32-2 amd64 Recognize the type of data in a file u +ii libmetis5:amd64 5.1.0.dfsg-5+ amd64 Serial Graph Partitioning and Fill-red +ii libmount1:amd64 2.29.2-1+deb9 amd64 device mounting library +ii libmpc3:amd64 1.1.0-1 amd64 multiple precision complex floating-po +ii libmpdec2:amd64 2.4.2-1 amd64 library for decimal floating point ari +ii libmpfr6:amd64 4.0.0-7 amd64 multiple precision floating-point comp +ii libmpx2:amd64 8-20180218-1 amd64 Intel memory protection extensions (ru +ii libncursesw5:amd 6.0+20161126- amd64 shared libraries for terminal handling +ii libnettle6:amd64 3.4-1 amd64 low level cryptographic library (symme +ii libnorm1:amd64 1.5r6+dfsg1-6 amd64 NACK-Oriented Reliable Multicast (NORM +ii libnpth0:amd64 1.5-3 amd64 replacement for GNU Pth using system t +ii libp11-kit0:amd6 0.23.9-2 amd64 library for loading and coordinating a +ii libpam-modules:a 1.1.8-3.6 amd64 Pluggable Authentication Modules for P +ii libpam-modules-b 1.1.8-3.6 amd64 Pluggable Authentication Modules for P +ii libpam-runtime 1.1.8-3.6 all Runtime support for the PAM library +ii libpam0g:amd64 1.1.8-3.6 amd64 Pluggable Authentication Modules libra +ii libpcre3:amd64 2:8.39-3 amd64 Old Perl 5 Compatible Regular Expressi +ii libperl5.26:amd6 5.26.1-5 amd64 shared Perl library +ii libpgm-5.2-0:amd 5.2.122~dfsg- amd64 OpenPGM shared library +ii libpng16-16:amd6 1.6.34-1 amd64 PNG library - runtime (version 1.6) +ii libpython-stdlib 2.7.14-4 amd64 interactive high-level object-oriented +ii libpython2.7-min 2.7.14-6 amd64 Minimal subset of the Python language +ii libpython2.7-std 2.7.14-6 amd64 Interactive high-level object-oriented +ii libpython3-dev:a 3.6.4-1 amd64 header files and a static library for +ii libpython3-stdli 3.6.4-1 amd64 interactive high-level object-oriented +ii libpython3.6:amd 3.6.4-4 amd64 Shared Python runtime library (version +ii libpython3.6-dev 3.6.4-4 amd64 Header files and a static library for +ii libpython3.6-min 3.6.4-4 amd64 Minimal subset of the Python language +ii libpython3.6-std 3.6.4-4 amd64 Interactive high-level object-oriented +ii libquadmath0:amd 8-20180218-1 amd64 GCC Quad-Precision Math Library +ii libreadline7:amd 7.0-3 amd64 GNU readline and history libraries, ru +ii libsasl2-2:amd64 2.1.27~101-g0 amd64 Cyrus SASL - authentication abstractio +ii libsasl2-modules 2.1.27~101-g0 amd64 Cyrus SASL - pluggable authentication +ii libsasl2-modules 2.1.27~101-g0 amd64 Cyrus SASL - pluggable authentication +ii libselinux1:amd6 2.6-3+b3 amd64 SELinux runtime shared libraries +ii libsemanage-comm 2.6-2 all Common files for SELinux policy manage +ii libsemanage1:amd 2.6-2 amd64 SELinux policy management library +ii libsepol1:amd64 2.6-2 amd64 SELinux library for manipulating binar +ii libsmartcols1:am 2.29.2-1+deb9 amd64 smart column output alignment library +ii libsnappy1v5:amd 1.1.7-1 amd64 fast compression/decompression library +ii libsodium23:amd6 1.0.16-2 amd64 Network communication, cryptography an +ii libsqlite3-0:amd 3.22.0-1 amd64 SQLite 3 shared library +ii libss2:amd64 1.43.4-2 amd64 command-line interface parsing library +ii libssl1.1:amd64 1.1.0g-2 amd64 Secure Sockets Layer toolkit - shared +ii libstdc++-7-dev: 7.3.0-5 amd64 GNU Standard C++ Library v3 (developme +ii libstdc++6:amd64 8-20180218-1 amd64 GNU Standard C++ Library v3 +ii libsuitesparseco 1:5.1.2-2 amd64 configuration routines for all SuiteSp +ii libsystemd0:amd6 232-25+deb9u1 amd64 systemd utility library +ii libsz2:amd64 1.0.2-1 amd64 Adaptive Entropy Coding library - SZIP +ii libtasn1-6:amd64 4.13-2 amd64 Manage ASN.1 structures (runtime) +ii libtcl8.6:amd64 8.6.8+dfsg-3 amd64 Tcl (the Tool Command Language) v8.6 - +ii libtiff5:amd64 4.0.9-4 amd64 Tag Image File Format (TIFF) library +ii libtinfo5:amd64 6.0+20161126- amd64 shared low-level terminfo library for +ii libtk8.6:amd64 8.6.8-3 amd64 Tk toolkit for Tcl and X11 v8.6 - run- +ii libtsan0:amd64 8-20180218-1 amd64 ThreadSanitizer -- a Valgrind-based de +ii libubsan0:amd64 7.3.0-5 amd64 UBSan -- undefined behaviour sanitizer +ii libudev1:amd64 232-25+deb9u1 amd64 libudev shared library +ii libumfpack5:amd6 1:5.1.2-2 amd64 sparse LU factorization library +ii libunistring2:am 0.9.8-1 amd64 Unicode string library for C +ii libustr-1.0-1:am 1.0.4-6 amd64 Micro string library: shared library +ii libuuid1:amd64 2.29.2-1+deb9 amd64 Universally Unique ID library +ii libwebp6:amd64 0.6.1-2 amd64 Lossy compression of digital photograp +ii libwebpdemux2:am 0.6.1-2 amd64 Lossy compression of digital photograp +ii libwebpmux3:amd6 0.6.1-2 amd64 Lossy compression of digital photograp +ii libx11-6:amd64 2:1.6.4-3 amd64 X11 client-side library +ii libx11-data 2:1.6.4-3 all X11 client-side library +ii libxau6:amd64 1:1.0.8-1+b2 amd64 X11 authorisation library +ii libxcb1:amd64 1.12-1 amd64 X C Binding +ii libxdmcp6:amd64 1:1.1.2-3 amd64 X11 Display Manager Control Protocol l +ii libxext6:amd64 2:1.3.3-1+b2 amd64 X11 miscellaneous extension library +ii libxft2:amd64 2.3.2-1+b2 amd64 FreeType-based font drawing library fo +ii libxml2:amd64 2.9.4+dfsg1-6 amd64 GNOME XML library +ii libxrender1:amd6 1:0.9.10-1 amd64 X Rendering Extension client library +ii libxslt1.1:amd64 1.1.29-5 amd64 XSLT 1.0 processing library - runtime +ii libxss1:amd64 1:1.2.2-1+b2 amd64 X11 Screen Saver extension library +ii libyaml-0-2:amd6 0.1.7-2 amd64 Fast YAML 1.1 parser and emitter libra +ii libzmq5:amd64 4.2.3-1+b1 amd64 lightweight messaging kernel (shared l +ii libzstd1 1.3.3+dfsg-1 amd64 fast lossless compression algorithm +ii linux-libc-dev:a 4.15.4-1 amd64 Linux support headers for userspace de +ii login 1:4.4-4.1 amd64 system login tools +ii lsb-base 9.20161125 all Linux Standard Base init script functi +ii make 4.1-9.1 amd64 utility for directing compilation +ii manpages 4.15-1 all Manual pages about using a GNU/Linux s +ii manpages-dev 4.15-1 all Manual pages about using GNU/Linux for +ii mawk 1.3.3-17+b3 amd64 a pattern scanning and text processing +ii mime-support 3.60 all MIME files 'mime.types' & 'mailcap', a +ii mount 2.29.2-1+deb9 amd64 tools for mounting and manipulating fi +ii multiarch-suppor 2.24-11+deb9u amd64 Transitional package to ensure multiar +ii ncurses-base 6.0+20161126- all basic terminal type definitions +ii ncurses-bin 6.0+20161126- amd64 terminal-related programs and man page +ii netbase 5.4 all Basic TCP/IP networking system +ii openssl 1.1.0g-2 amd64 Secure Sockets Layer toolkit - cryptog +ii pandoc 1.19.2.4~dfsg amd64 general markup converter +ii pandoc-data 1.19.2.4~dfsg all general markup converter - data files +ii passwd 1:4.4-4.1 amd64 change and administer password and gro +ii patch 2.7.6-1 amd64 Apply a diff file to an original +ii perl 5.26.1-5 amd64 Larry Wall's Practical Extraction and +ii perl-base 5.26.1-5 amd64 minimal Perl system +ii perl-modules-5.2 5.26.1-5 all Core Perl modules +ii pinentry-curses 1.1.0-1 amd64 curses-based PIN or pass-phrase entry +ii python 2.7.14-4 amd64 interactive high-level object-oriented +ii python-matplotli 2.1.1-2 all Python based plotting system (data pac +ii python-minimal 2.7.14-4 amd64 minimal subset of the Python language +ii python-pip-whl 9.0.1-2 all Python package installer +ii python-tables-da 3.4.2-4 all hierarchical database for Python based +ii python2.7 2.7.14-6 amd64 Interactive high-level object-oriented +ii python2.7-minima 2.7.14-6 amd64 Minimal subset of the Python language +ii python3 3.6.4-1 amd64 interactive high-level object-oriented +ii python3-asn1cryp 0.24.0-1 all Fast ASN.1 parser and serializer (Pyth +ii python3-bleach 2.1.3-1 all whitelist-based HTML-sanitizing librar +ii python3-bs4 4.6.0-1 all error-tolerant HTML parser for Python +ii python3-cffi-bac 1.11.5-1 amd64 Foreign Function Interface for Python +ii python3-chardet 3.0.4-1 all universal character encoding detector +ii python3-crypto 2.6.1-8 amd64 cryptographic algorithms and protocols +ii python3-cryptogr 2.1.4-1 amd64 Python library exposing cryptographic +ii python3-cvxopt 1.1.9+dfsg-2+ amd64 Python3 package for convex optimizatio +ii python3-cycler 0.10.0-1 all composable kwarg iterator (Python 3) +ii python3-dateutil 2.6.1-1 all powerful extensions to the standard Py +ii python3-dbus 1.2.6-1 amd64 simple interprocess messaging system ( +ii python3-decorato 4.1.2-1 all simplify usage of Python decorators by +ii python3-dev 3.6.4-1 amd64 header files and a static library for +ii python3-distutil 3.6.4-4 all distutils package for Python 3.x +ii python3-entrypoi 0.2.3-1 all Discover and load entry points from in +ii python3-gi 3.26.1-2 amd64 Python 3 bindings for gobject-introspe +ii python3-html5lib 0.999999999-1 all HTML parser/tokenizer based on the WHA +ii python3-idna 2.6-1 all Python IDNA2008 (RFC 5891) handling (P +ii python3-ipykerne 4.8.2-2 all IPython kernel for Jupyter (Python 3) +ii python3-ipython 5.5.0-1 all Enhanced interactive Python shell (Pyt +ii python3-ipython- 0.2.0-1 all IPython vestigial utilities for Python +ii python3-jinja2 2.10-1 all small but fast and easy to use stand-a +ii python3-joblib 0.11-1 all tools to provide lightweight pipelinin +ii python3-jsonsche 2.6.0-2 all An(other) implementation of JSON Schem +ii python3-jupyter- 5.2.2-1 all Jupyter protocol client APIs (Python 3 +ii python3-jupyter- 4.4.0-2 all Core common functionality of Jupyter p +ii python3-keyring 10.6.0-1 all store and access your passwords safely +ii python3-keyrings 3.0-1 all alternate backend implementations for +ii python3-lib2to3 3.6.4-4 all Interactive high-level object-oriented +ii python3-lxml 4.1.0-1 amd64 pythonic binding for the libxml2 and l +ii python3-markupsa 1.0-1+b1 amd64 HTML/XHTML/XML string library for Pyth +ii python3-matplotl 2.1.1-2 amd64 Python based plotting system in a styl +ii python3-minimal 3.6.4-1 amd64 minimal subset of the Python language +ii python3-mistune 0.8.3-2 all Markdown parser for Python 3 +ii python3-nbconver 5.3.1-1 all Jupyter notebook conversion (Python 3) +ii python3-nbformat 4.4.0-1 all Jupyter notebook format (Python 3) +ii python3-numexpr 2.6.4-1 amd64 Fast numerical array expression evalua +ii python3-numpy 1:1.13.3-2 amd64 Fast array facility to the Python 3 la +ii python3-olefile 0.45.1-1 all Python module to read/write MS OLE2 fi +ii python3-pandas 0.20.3-11 all data structures for "relational" or "l +ii python3-pandas-l 0.20.3-11 amd64 low-level implementations and bindings +ii python3-pandocfi 1.4.2-1 all python3 bindings for Pandoc's filters +ii python3-patsy 0.4.1+git34-g all statistical models in Python using sym +ii python3-pexpect 4.2.1-1 all Python 3 module for automating interac +ii python3-picklesh 0.7.4-2 all File system based database that uses P +ii python3-pil:amd6 4.3.0-2 amd64 Python Imaging Library (Python3) +ii python3-pip 9.0.1-2 all Python package installer +ii python3-pkg-reso 38.4.0-1 all Package Discovery and Resource Access +ii python3-prompt-t 1.0.15-1 all library for building interactive comma +ii python3-ptyproce 0.5.2-1 all Run a subprocess in a pseudo terminal +ii python3-py 1.5.2-1 all Advanced Python development support li +ii python3-pygments 2.2.0+dfsg-1 all syntax highlighting package written in +ii python3-pyparsin 2.2.0+dfsg1-2 all alternative to creating and executing +ii python3-pytest 3.2.5-2 all Simple, powerful testing in Python3 +ii python3-scipy 0.19.1-2 amd64 scientific tools for Python 3 +ii python3-secretst 2.3.1-2 all Python module for storing secrets - Py +ii python3-setuptoo 38.4.0-1 all Python3 Distutils Enhancements +ii python3-simplege 0.8.1-1 all simple generic functions for Python3 +ii python3-simplejs 3.13.2-1 amd64 simple, fast, extensible JSON encoder/ +ii python3-six 1.11.0-2 all Python 2 and 3 compatibility library ( +ii python3-statsmod 0.8.0-6 all Python3 module for the estimation of s +ii python3-statsmod 0.8.0-6 amd64 Python3 low-level implementations and +ii python3-tables 3.4.2-4 all hierarchical database for Python3 base +ii python3-tables-l 3.4.2-4 amd64 hierarchical database for Python3 base +ii python3-testpath 0.3.1+dfsg-3 all Utilities for Python 3 code working wi +ii python3-tk:amd64 3.6.4-4 amd64 Tkinter - Writing Tk applications with +ii python3-tornado 4.5.3-1 amd64 scalable, non-blocking web server and +ii python3-traitlet 4.3.2-1 all Lightweight Traits-like package for Py +ii python3-tz 2018.3-2 all Python3 version of the Olson timezone +ii python3-wcwidth 0.1.7+dfsg1-1 all determine printable width of a string +ii python3-webencod 0.5-2 all Python implementation of the WHATWG En +ii python3-wheel 0.30.0-0.2 all built-package format for Python +ii python3-xdg 0.25-4 all Python 3 library to access freedesktop +ii python3-zmq 16.0.2-2+b1 amd64 Python3 bindings for 0MQ library +ii python3.6 3.6.4-4 amd64 Interactive high-level object-oriented +ii python3.6-dev 3.6.4-4 amd64 Header files and a static library for +ii python3.6-minima 3.6.4-4 amd64 Minimal subset of the Python language +ii readline-common 7.0-3 all GNU readline and history libraries, co +ii sed 4.4-1 amd64 GNU stream editor for filtering/transf +ii sensible-utils 0.0.9+deb9u1 all Utilities for sensible alternative sel +ii shared-mime-info 1.9-2 amd64 FreeDesktop.org shared MIME database a +ii sysvinit-utils 2.88dsf-59.9 amd64 System-V-like utilities +ii tar 1.29b-1.1 amd64 GNU version of the tar archiving utili +ii tk8.6-blt2.5 2.5.3+dfsg-4 amd64 graphics extension library for Tcl/Tk +ii ttf-bitstream-ve 1.10-8 all The Bitstream Vera family of free True +ii tzdata 2019a-0+deb9u all time zone and daylight-saving time dat +ii ucf 3.0038 all Update Configuration File(s): preserve +ii util-linux 2.29.2-1+deb9 amd64 miscellaneous system utilities +ii x11-common 1:7.7+19 all X Window System (X.Org) infrastructure +ii xdg-user-dirs 0.16-1 amd64 tool to manage well known user directo +ii xz-utils 5.2.2-1.3 amd64 XZ-format compression utilities ii zlib1g:amd64 1:1.2.8.dfsg- amd64 compression library - runtime #+end_example @@ -4080,6 +4678,8 @@ docker commit 3e302c4c2ed7 debian_stretch_20180310_python3_statsmodels See - https://hub.docker.com/ - https://jupyter-docker-stacks.readthedocs.io/en/latest/index.html +- https://jupyter-docker-stacks.readthedocs.io/en/latest/using/selecting.html#jupyter-base-notebook + #+begin_src shell :results output :exports both docker search jupyter #+end_src @@ -4125,6 +4725,10 @@ docker run -p 8888:8888 jupyter/scipy-notebook docker run -p 8888:8888 jupyter/scipy-notebook:17aba6048f44 # from the doc #+end_src +#+begin_src shell :results output :exports both +docker run -p 8888:8888 -e JUPYTER_ENABLE_LAB=yes jupyter/scipy-notebook:17aba6048f44 # from the doc +#+end_src + Ou from https://hub.docker.com/r/jupyter/scipy-notebook/tags/?page=10 #+begin_src shell :results output :exports both docker run -p 8888:8888 jupyter/scipy-notebook:dc6ae8bd8209 # a 3 years old image -- 2.18.1