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module1/ressources/introduction_to_markdown.html
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...@@ -3,27 +3,27 @@ ...@@ -3,27 +3,27 @@
<div id="table-of-contents"> <div id="table-of-contents">
<h2>Table of Contents</h2> <h2>Table of Contents</h2>
<div id="text-table-of-contents"> <div id="text-table-of-contents">
<ul> <ul style="margin:0 0;">
<li style="margin-bottom:0;"><a href="#org8de79b7">Syntaxe</a> <li style="margin-bottom:0;"><a href="#orgf6eedf1">Syntaxe</a>
<ul> <ul style="margin:0 0;">
<li style="margin-bottom:0;"><a href="#orgd0cd01a">Headers</a></li> <li style="margin-bottom:0;"><a href="#org73f8334">Headers</a></li>
<li style="margin-bottom:0;"><a href="#org0a02e8a">Emphasis</a></li> <li style="margin-bottom:0;"><a href="#orge859927">Emphasis</a></li>
<li style="margin-bottom:0;"><a href="#org5ba3da0">Lists</a> <li style="margin-bottom:0;"><a href="#orgd9ebabe">Lists</a>
<ul> <ul style="margin:0 0;">
<li style="margin-bottom:0;"><a href="#orgf404e08">Unordered</a></li> <li style="margin-bottom:0;"><a href="#org82bce14">Unordered</a></li>
<li style="margin-bottom:0;"><a href="#orga07db10">Ordered</a></li> <li style="margin-bottom:0;"><a href="#orgc3305db">Ordered</a></li>
</ul> </ul>
</li> </li>
<li style="margin-bottom:0;"><a href="#orgea33b61">Images</a></li> <li style="margin-bottom:0;"><a href="#orgcf2594b">Images</a></li>
<li style="margin-bottom:0;"><a href="#org45306c5">Links</a></li> <li style="margin-bottom:0;"><a href="#org12709c1">Links</a></li>
<li style="margin-bottom:0;"><a href="#org8cf7f47">Blockquotes</a></li> <li style="margin-bottom:0;"><a href="#org36f0088">Blockquotes</a></li>
<li style="margin-bottom:0;"><a href="#org5cc4188">Inline code</a></li> <li style="margin-bottom:0;"><a href="#org4178eea">Inline code</a></li>
</ul> </ul>
</li> </li>
<li style="margin-bottom:0;"><a href="#orgf5d12d0">Écrire des Maths</a> <li style="margin-bottom:0;"><a href="#orgdd8366e">Écrire des Maths</a>
<ul> <ul style="margin:0 0;">
<li style="margin-bottom:0;"><a href="#orgd3d090f">Lettres grecques</a></li> <li style="margin-bottom:0;"><a href="#orgce6558c">Lettres grecques</a></li>
<li style="margin-bottom:0;"><a href="#org4cbab17">Operators</a></li> <li style="margin-bottom:0;"><a href="#orgad06742">Operators</a></li>
</ul> </ul>
</li> </li>
</ul> </ul>
...@@ -34,13 +34,13 @@ Voici un aperçu rapide de la syntaxe Markdown repris d'une ...@@ -34,13 +34,13 @@ Voici un aperçu rapide de la syntaxe Markdown repris d'une
<a href="https://guides.github.com/features/mastering-markdown/">présentation de Github</a> ainsi que de celles d'<a href="http://csrgxtu.github.io/2015/03/20/Writing-Mathematic-Fomulars-in-Markdown/">Archer Reilly</a> et de <a href="http://www.statpower.net/Content/310/R%20Stuff/SampleMarkdown.html">James <a href="https://guides.github.com/features/mastering-markdown/">présentation de Github</a> ainsi que de celles d'<a href="http://csrgxtu.github.io/2015/03/20/Writing-Mathematic-Fomulars-in-Markdown/">Archer Reilly</a> et de <a href="http://www.statpower.net/Content/310/R%20Stuff/SampleMarkdown.html">James
H. Steiger</a>. H. Steiger</a>.
</p> </p>
<div id="outline-container-org8de79b7" class="outline-2"> <div id="outline-container-orgf6eedf1" class="outline-2">
<h2 id="org8de79b7">Syntaxe</h2> <h2 id="orgf6eedf1">Syntaxe</h2>
<div class="outline-text-2" id="text-org8de79b7"> <div class="outline-text-2" id="text-orgf6eedf1">
</div> </div>
<div id="outline-container-orgd0cd01a" class="outline-3"> <div id="outline-container-org73f8334" class="outline-3">
<h3 id="orgd0cd01a">Headers</h3> <h3 id="org73f8334">Headers</h3>
<div class="outline-text-3" id="text-orgd0cd01a"> <div class="outline-text-3" id="text-org73f8334">
<pre style="padding-left: 30px; background-color: #f6f8fa;" class="example"> <pre style="padding-left: 30px; background-color: #f6f8fa;" class="example">
# This is an &lt;h1&gt; tag # This is an &lt;h1&gt; tag
## This is an &lt;h2&gt; tag ## This is an &lt;h2&gt; tag
...@@ -49,9 +49,9 @@ H. Steiger</a>. ...@@ -49,9 +49,9 @@ H. Steiger</a>.
</div> </div>
</div> </div>
<div id="outline-container-org0a02e8a" class="outline-3"> <div id="outline-container-orge859927" class="outline-3">
<h3 id="org0a02e8a">Emphasis</h3> <h3 id="orge859927">Emphasis</h3>
<div class="outline-text-3" id="text-org0a02e8a"> <div class="outline-text-3" id="text-orge859927">
<pre style="padding-left: 30px; background-color: #f6f8fa;" class="example"> <pre style="padding-left: 30px; background-color: #f6f8fa;" class="example">
*This text will be italic* *This text will be italic*
_This will also be italic_ _This will also be italic_
...@@ -64,13 +64,13 @@ _You **can** combine them_ ...@@ -64,13 +64,13 @@ _You **can** combine them_
</div> </div>
</div> </div>
<div id="outline-container-org5ba3da0" class="outline-3"> <div id="outline-container-orgd9ebabe" class="outline-3">
<h3 id="org5ba3da0">Lists</h3> <h3 id="orgd9ebabe">Lists</h3>
<div class="outline-text-3" id="text-org5ba3da0"> <div class="outline-text-3" id="text-orgd9ebabe">
</div> </div>
<div id="outline-container-orgf404e08" class="outline-4"> <div id="outline-container-org82bce14" class="outline-4">
<h4 id="orgf404e08">Unordered</h4> <h4 id="org82bce14">Unordered</h4>
<div class="outline-text-4" id="text-orgf404e08"> <div class="outline-text-4" id="text-org82bce14">
<pre style="padding-left: 30px; background-color: #f6f8fa;" class="example"> <pre style="padding-left: 30px; background-color: #f6f8fa;" class="example">
* Item 1 * Item 1
* Item 2 * Item 2
...@@ -79,9 +79,9 @@ _You **can** combine them_ ...@@ -79,9 +79,9 @@ _You **can** combine them_
</pre> </pre>
</div> </div>
</div> </div>
<div id="outline-container-orga07db10" class="outline-4"> <div id="outline-container-orgc3305db" class="outline-4">
<h4 id="orga07db10">Ordered</h4> <h4 id="orgc3305db">Ordered</h4>
<div class="outline-text-4" id="text-orga07db10"> <div class="outline-text-4" id="text-orgc3305db">
<pre style="padding-left: 30px; background-color: #f6f8fa;" class="example"> <pre style="padding-left: 30px; background-color: #f6f8fa;" class="example">
1. Item 1 1. Item 1
1. Item 2 1. Item 2
...@@ -92,27 +92,27 @@ _You **can** combine them_ ...@@ -92,27 +92,27 @@ _You **can** combine them_
</div> </div>
</div> </div>
</div> </div>
<div id="outline-container-orgea33b61" class="outline-3"> <div id="outline-container-orgcf2594b" class="outline-3">
<h3 id="orgea33b61">Images</h3> <h3 id="orgcf2594b">Images</h3>
<div class="outline-text-3" id="text-orgea33b61"> <div class="outline-text-3" id="text-orgcf2594b">
<pre style="padding-left: 30px; background-color: #f6f8fa;" class="example"> <pre style="padding-left: 30px; background-color: #f6f8fa;" class="example">
![GitHub Logo](/images/logo.png) ![GitHub Logo](/images/logo.png)
Format: ![Alt Text](url) Format: ![Alt Text](url)
</pre> </pre>
</div> </div>
</div> </div>
<div id="outline-container-org45306c5" class="outline-3"> <div id="outline-container-org12709c1" class="outline-3">
<h3 id="org45306c5">Links</h3> <h3 id="org12709c1">Links</h3>
<div class="outline-text-3" id="text-org45306c5"> <div class="outline-text-3" id="text-org12709c1">
<pre style="padding-left: 30px; background-color: #f6f8fa;" class="example"> <pre style="padding-left: 30px; background-color: #f6f8fa;" class="example">
http://github.com - automatic! http://github.com - automatic!
[GitHub](http://github.com) [GitHub](http://github.com)
</pre> </pre>
</div> </div>
</div> </div>
<div id="outline-container-org8cf7f47" class="outline-3"> <div id="outline-container-org36f0088" class="outline-3">
<h3 id="org8cf7f47">Blockquotes</h3> <h3 id="org36f0088">Blockquotes</h3>
<div class="outline-text-3" id="text-org8cf7f47"> <div class="outline-text-3" id="text-org36f0088">
<pre style="padding-left: 30px; background-color: #f6f8fa;" class="example"> <pre style="padding-left: 30px; background-color: #f6f8fa;" class="example">
As Kanye West said: As Kanye West said:
...@@ -121,9 +121,9 @@ As Kanye West said: ...@@ -121,9 +121,9 @@ As Kanye West said:
</pre> </pre>
</div> </div>
</div> </div>
<div id="outline-container-org5cc4188" class="outline-3"> <div id="outline-container-org4178eea" class="outline-3">
<h3 id="org5cc4188">Inline code</h3> <h3 id="org4178eea">Inline code</h3>
<div class="outline-text-3" id="text-org5cc4188"> <div class="outline-text-3" id="text-org4178eea">
<pre style="padding-left: 30px; background-color: #f6f8fa;" class="example"> <pre style="padding-left: 30px; background-color: #f6f8fa;" class="example">
I think you should use an I think you should use an
`&lt;addr&gt;` element here instead. `&lt;addr&gt;` element here instead.
...@@ -131,9 +131,9 @@ I think you should use an ...@@ -131,9 +131,9 @@ I think you should use an
</div> </div>
</div> </div>
</div> </div>
<div id="outline-container-orgf5d12d0" class="outline-2"> <div id="outline-container-orgdd8366e" class="outline-2">
<h2 id="orgf5d12d0">Écrire des Maths</h2> <h2 id="orgdd8366e">Écrire des Maths</h2>
<div class="outline-text-2" id="text-orgf5d12d0"> <div class="outline-text-2" id="text-orgdd8366e">
<p> <p>
Equations can be formatted <b>inline</b> or as <b>displayed formulas</b>. In the Equations can be formatted <b>inline</b> or as <b>displayed formulas</b>. In the
latter case, they are centered and set off from the main text. In the latter case, they are centered and set off from the main text. In the
...@@ -177,9 +177,9 @@ This summation expression is in display form. ...@@ -177,9 +177,9 @@ This summation expression is in display form.
</p> </p>
</div> </div>
<div id="outline-container-orgd3d090f" class="outline-3"> <div id="outline-container-orgce6558c" class="outline-3">
<h3 id="orgd3d090f">Lettres grecques</h3> <h3 id="orgce6558c">Lettres grecques</h3>
<div class="outline-text-3" id="text-orgd3d090f"> <div class="outline-text-3" id="text-orgce6558c">
<table border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides"> <table border="2" cellspacing="0" cellpadding="6" rules="groups" frame="hsides">
...@@ -223,8 +223,8 @@ This summation expression is in display form. ...@@ -223,8 +223,8 @@ This summation expression is in display form.
</table> </table>
</div> </div>
</div> </div>
<div id="outline-container-org4cbab17" class="outline-3"> <div id="outline-container-orgad06742" class="outline-3">
<h3 id="org4cbab17">Operators</h3> <h3 id="orgad06742">Operators</h3>
</div> </div>
</div> </div>
</div> </div>
module2/ressources/emacs_orgmode.html
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module2/ressources/jupyter.html
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...@@ -3,32 +3,32 @@ ...@@ -3,32 +3,32 @@
<div id="table-of-contents"> <div id="table-of-contents">
<h2>Table of Contents</h2> <h2>Table of Contents</h2>
<div id="text-table-of-contents"> <div id="text-table-of-contents">
<ul> <ul style="margin:0 0;">
<li style="margin-bottom:0;"><a href="#orgc72397d">Interacting with gitlab</a></li> <li style="margin-bottom:0;"><a href="#orgaa631f0">Interacting with gitlab</a></li>
<li style="margin-bottom:0;"><a href="#org186a10f">Additional Jupyter resources or tricks</a> <li style="margin-bottom:0;"><a href="#orgc0bede2">Additional Jupyter resources or tricks</a>
<ul> <ul style="margin:0 0;">
<li style="margin-bottom:0;"><a href="#org9d17f16">Tips and tricks</a></li> <li style="margin-bottom:0;"><a href="#orga0a8c0a">Tips and tricks</a></li>
<li style="margin-bottom:0;"><a href="#org3c5eb3e">Running R and Python in the same notebook</a></li> <li style="margin-bottom:0;"><a href="#orgcc5df2c">Running R and Python in the same notebook</a></li>
<li style="margin-bottom:0;"><a href="#org656a59e">Exporting a notebook</a></li> <li style="margin-bottom:0;"><a href="#org50f9d65">Exporting a notebook</a></li>
</ul> </ul>
</li> </li>
<li style="margin-bottom:0;"><a href="#org2b24a9c">Installing jupyter or jupyter hub on your own machine</a> <li style="margin-bottom:0;"><a href="#org9ad15fe">Installing jupyter or jupyter hub on your own machine</a>
<ul> <ul style="margin:0 0;">
<li style="margin-bottom:0;"><a href="#orgfe13c9b">Installing jupyter</a></li> <li style="margin-bottom:0;"><a href="#org3c82116">Installing jupyter</a></li>
<li style="margin-bottom:0;"><a href="#orgaeb7a97">Using R</a></li> <li style="margin-bottom:0;"><a href="#org41613aa">Using R</a></li>
<li style="margin-bottom:0;"><a href="#orgbf7d110">Exporting your notebooks with latex</a></li> <li style="margin-bottom:0;"><a href="#orgeebc12b">Exporting your notebooks with latex</a></li>
<li style="margin-bottom:0;"><a href="#orgff388aa">Interacting with gitlab</a></li> <li style="margin-bottom:0;"><a href="#orgf4f33c6">Interacting with gitlab</a></li>
<li style="margin-bottom:0;"><a href="#org77fb4ca">Interesting extensions to improve notebook readability</a></li> <li style="margin-bottom:0;"><a href="#orgd30b2c8">Interesting extensions to improve notebook readability</a></li>
<li style="margin-bottom:0;"><a href="#org364ee89">Installing jupyterhub</a></li> <li style="margin-bottom:0;"><a href="#org883d82c">Installing jupyterhub</a></li>
</ul> </ul>
</li> </li>
</ul> </ul>
</div> </div>
</div> </div>
<div id="outline-container-orgc72397d" class="outline-2"> <div id="outline-container-orgaa631f0" class="outline-2">
<h2 id="orgc72397d">Interacting with gitlab</h2> <h2 id="orgaa631f0">Interacting with gitlab</h2>
<div class="outline-text-2" id="text-orgc72397d"> <div class="outline-text-2" id="text-orgaa631f0">
<blockquote> <blockquote>
<p> <p>
This section needs some love. This section needs some love.
...@@ -45,13 +45,13 @@ and to share your notebook with others. ...@@ -45,13 +45,13 @@ and to share your notebook with others.
</p> </p>
</div> </div>
</div> </div>
<div id="outline-container-org186a10f" class="outline-2"> <div id="outline-container-orgc0bede2" class="outline-2">
<h2 id="org186a10f">Additional Jupyter resources or tricks</h2> <h2 id="orgc0bede2">Additional Jupyter resources or tricks</h2>
<div class="outline-text-2" id="text-org186a10f"> <div class="outline-text-2" id="text-orgc0bede2">
</div> </div>
<div id="outline-container-org9d17f16" class="outline-3"> <div id="outline-container-orga0a8c0a" class="outline-3">
<h3 id="org9d17f16">Tips and tricks</h3> <h3 id="orga0a8c0a">Tips and tricks</h3>
<div class="outline-text-3" id="text-org9d17f16"> <div class="outline-text-3" id="text-orga0a8c0a">
<p> <p>
The following <a href="https://www.dataquest.io/blog/jupyter-notebook-tips-tricks-shortcuts/">webpage</a> lists several Jupyter tricks (in particular, it The following <a href="https://www.dataquest.io/blog/jupyter-notebook-tips-tricks-shortcuts/">webpage</a> lists several Jupyter tricks (in particular, it
illustrates many <code>Ipython magic</code> commands) that should improve your illustrates many <code>Ipython magic</code> commands) that should improve your
...@@ -61,9 +61,9 @@ now). ...@@ -61,9 +61,9 @@ now).
</p> </p>
</div> </div>
</div> </div>
<div id="outline-container-org3c5eb3e" class="outline-3"> <div id="outline-container-orgcc5df2c" class="outline-3">
<h3 id="org3c5eb3e">Running R and Python in the same notebook</h3> <h3 id="orgcc5df2c">Running R and Python in the same notebook</h3>
<div class="outline-text-3" id="text-org3c5eb3e"> <div class="outline-text-3" id="text-orgcc5df2c">
<p> <p>
The best solution to this is to install rpy2. On my machine, I have The best solution to this is to install rpy2. On my machine, I have
installed the <code>python3-rpy2</code> debian package with <code>apt-get install</code>. An installed the <code>python3-rpy2</code> debian package with <code>apt-get install</code>. An
...@@ -105,9 +105,9 @@ plot((df) ...@@ -105,9 +105,9 @@ plot((df)
</ol> </ol>
</div> </div>
</div> </div>
<div id="outline-container-org656a59e" class="outline-3"> <div id="outline-container-org50f9d65" class="outline-3">
<h3 id="org656a59e">Exporting a notebook</h3> <h3 id="org50f9d65">Exporting a notebook</h3>
<div class="outline-text-3" id="text-org656a59e"> <div class="outline-text-3" id="text-org50f9d65">
<p> <p>
Obviously, you can convert to html or pdf using the using the <code>File &gt; Obviously, you can convert to html or pdf using the using the <code>File &gt;
Download as &gt; HTML</code> (or <code>PDF</code>) menu option. This can also be done from Download as &gt; HTML</code> (or <code>PDF</code>) menu option. This can also be done from
...@@ -134,13 +134,13 @@ taste. ...@@ -134,13 +134,13 @@ taste.
</div> </div>
</div> </div>
</div> </div>
<div id="outline-container-org2b24a9c" class="outline-2"> <div id="outline-container-org9ad15fe" class="outline-2">
<h2 id="org2b24a9c">Installing jupyter or jupyter hub on your own machine</h2> <h2 id="org9ad15fe">Installing jupyter or jupyter hub on your own machine</h2>
<div class="outline-text-2" id="text-org2b24a9c"> <div class="outline-text-2" id="text-org9ad15fe">
</div> </div>
<div id="outline-container-orgfe13c9b" class="outline-3"> <div id="outline-container-org3c82116" class="outline-3">
<h3 id="orgfe13c9b">Installing jupyter</h3> <h3 id="org3c82116">Installing jupyter</h3>
<div class="outline-text-3" id="text-orgfe13c9b"> <div class="outline-text-3" id="text-org3c82116">
<p> <p>
Here is what you should install: Here is what you should install:
</p> </p>
...@@ -171,16 +171,16 @@ The ipython notebook can then be run with the following command: ...@@ -171,16 +171,16 @@ The ipython notebook can then be run with the following command:
</div> </div>
</div> </div>
</div> </div>
<div id="outline-container-orgaeb7a97" class="outline-3"> <div id="outline-container-org41613aa" class="outline-3">
<h3 id="orgaeb7a97">Using R</h3> <h3 id="org41613aa">Using R</h3>
<div class="outline-text-3" id="text-orgaeb7a97"> <div class="outline-text-3" id="text-org41613aa">
<p> <p>
If you also want to have the R kernel in jupyter, follow <a href="https://github.com/IRkernel/IRkernel#installation">these If you also want to have the R kernel in jupyter, follow <a href="https://github.com/IRkernel/IRkernel#installation">these
instructions</a>. instructions</a>.
</p> </p>
<p> <p>
Alternatively, you can install <code>rpy2</code> (see the <a href="#org3c5eb3e">Running R and Python in Alternatively, you can install <code>rpy2</code> (see the <a href="#orgcc5df2c">Running R and Python in
the same notebook</a> section). the same notebook</a> section).
</p> </p>
<div class="org-src-container"> <div class="org-src-container">
...@@ -189,9 +189,9 @@ the same notebook</a> section). ...@@ -189,9 +189,9 @@ the same notebook</a> section).
</div> </div>
</div> </div>
</div> </div>
<div id="outline-container-orgbf7d110" class="outline-3"> <div id="outline-container-orgeebc12b" class="outline-3">
<h3 id="orgbf7d110">Exporting your notebooks with latex</h3> <h3 id="orgeebc12b">Exporting your notebooks with latex</h3>
<div class="outline-text-3" id="text-orgbf7d110"> <div class="outline-text-3" id="text-orgeebc12b">
<p> <p>
Here is what I had to install to make sure the notebook export via Here is what I had to install to make sure the notebook export via
latex works: latex works:
...@@ -203,9 +203,9 @@ sudo apt-get install texlive-xetex ...@@ -203,9 +203,9 @@ sudo apt-get install texlive-xetex
</div> </div>
</div> </div>
</div> </div>
<div id="outline-container-orgff388aa" class="outline-3"> <div id="outline-container-orgf4f33c6" class="outline-3">
<h3 id="orgff388aa">Interacting with gitlab</h3> <h3 id="orgf4f33c6">Interacting with gitlab</h3>
<div class="outline-text-3" id="text-orgff388aa"> <div class="outline-text-3" id="text-orgf4f33c6">
<p> <p>
Here is our <a href="https://github.com/brospars/nb-git">jupyter extension that allows to git push/pull from the Here is our <a href="https://github.com/brospars/nb-git">jupyter extension that allows to git push/pull from the
notebooks</a>: notebooks</a>:
...@@ -217,9 +217,9 @@ jupyter nbextension enable nb-git ...@@ -217,9 +217,9 @@ jupyter nbextension enable nb-git
</div> </div>
</div> </div>
</div> </div>
<div id="outline-container-org77fb4ca" class="outline-3"> <div id="outline-container-orgd30b2c8" class="outline-3">
<h3 id="org77fb4ca">Interesting extensions to improve notebook readability</h3> <h3 id="orgd30b2c8">Interesting extensions to improve notebook readability</h3>
<div class="outline-text-3" id="text-org77fb4ca"> <div class="outline-text-3" id="text-orgd30b2c8">
<p> <p>
Here are two interesting extensions that can improve readability: Here are two interesting extensions that can improve readability:
</p> </p>
...@@ -245,9 +245,9 @@ jupyter-serverextension enable --py hide_code ...@@ -245,9 +245,9 @@ jupyter-serverextension enable --py hide_code
</ul> </ul>
</div> </div>
</div> </div>
<div id="outline-container-org364ee89" class="outline-3"> <div id="outline-container-org883d82c" class="outline-3">
<h3 id="org364ee89">Installing jupyterhub</h3> <h3 id="org883d82c">Installing jupyterhub</h3>
<div class="outline-text-3" id="text-org364ee89"> <div class="outline-text-3" id="text-org883d82c">
<blockquote> <blockquote>
<p> <p>
Benoit may give a few hints on this. Benoit may give a few hints on this.
......
module2/ressources/rstudio.html
View file @ 91dec995
...@@ -3,37 +3,37 @@ ...@@ -3,37 +3,37 @@
<div id="table-of-contents"> <div id="table-of-contents">
<h2>Table of Contents</h2> <h2>Table of Contents</h2>
<div id="text-table-of-contents"> <div id="text-table-of-contents">
<ul> <ul style="margin:0 0;">
<li style="margin-bottom:0;"><a href="#org47ec510">Installing Rstudio</a> <li style="margin-bottom:0;"><a href="#org68a44ad">Installing Rstudio</a>
<ul> <ul style="margin:0 0;">
<li style="margin-bottom:0;"><a href="#org366dd3d">Linux (debian, ubuntu)</a> <li style="margin-bottom:0;"><a href="#org75fa2dd">Linux (debian, ubuntu)</a>
<ul> <ul style="margin:0 0;">
<li style="margin-bottom:0;"><a href="#orgba71b69">Installing R</a></li> <li style="margin-bottom:0;"><a href="#orgb3ecfea">Installing R</a></li>
<li style="margin-bottom:0;"><a href="#orgfe3a4ba">Installing rstudio</a></li> <li style="margin-bottom:0;"><a href="#orgd6fe18e">Installing rstudio</a></li>
</ul> </ul>
</li> </li>
<li style="margin-bottom:0;"><a href="#orgdf29b54">Mac OSX and Windows</a></li> <li style="margin-bottom:0;"><a href="#org337678e">Mac OSX and Windows</a></li>
</ul> </ul>
</li> </li>
<li style="margin-bottom:0;"><a href="#orgd30feb0">Installing Git</a> <li style="margin-bottom:0;"><a href="#org150ee9f">Installing Git</a>
<ul> <ul style="margin:0 0;">
<li style="margin-bottom:0;"><a href="#org02fa6c2">Linux (debian, ubuntu)</a></li> <li style="margin-bottom:0;"><a href="#org79b3b23">Linux (debian, ubuntu)</a></li>
<li style="margin-bottom:0;"><a href="#org0611f52">Mac OSX and Windows</a></li> <li style="margin-bottom:0;"><a href="#org536eda4">Mac OSX and Windows</a></li>
</ul> </ul>
</li> </li>
<li style="margin-bottom:0;"><a href="#orgabc8626">Rstudio and git/github/gitlab</a></li> <li style="margin-bottom:0;"><a href="#orgbb4bef3">Rstudio and git/github/gitlab</a></li>
<li style="margin-bottom:0;"><a href="#org270116a">Cheat Sheets</a></li> <li style="margin-bottom:0;"><a href="#org81cf7bc">Cheat Sheets</a></li>
</ul> </ul>
</div> </div>
</div> </div>
<div id="outline-container-org47ec510" class="outline-2"> <div id="outline-container-org68a44ad" class="outline-2">
<h2 id="org47ec510">Installing Rstudio</h2> <h2 id="org68a44ad">Installing Rstudio</h2>
<div class="outline-text-2" id="text-org47ec510"> <div class="outline-text-2" id="text-org68a44ad">
</div> </div>
<div id="outline-container-org366dd3d" class="outline-3"> <div id="outline-container-org75fa2dd" class="outline-3">
<h3 id="org366dd3d">Linux (debian, ubuntu)</h3> <h3 id="org75fa2dd">Linux (debian, ubuntu)</h3>
<div class="outline-text-3" id="text-org366dd3d"> <div class="outline-text-3" id="text-org75fa2dd">
<p> <p>
We provide here only instructions for debian-based distributions. Feel We provide here only instructions for debian-based distributions. Feel
free to contribute to this document to provide up-to-date information free to contribute to this document to provide up-to-date information
...@@ -55,9 +55,9 @@ for upgrading&#x2026; ...@@ -55,9 +55,9 @@ for upgrading&#x2026;
</p> </p>
</div> </div>
<div id="outline-container-orgba71b69" class="outline-4"> <div id="outline-container-orgb3ecfea" class="outline-4">
<h4 id="orgba71b69">Installing R</h4> <h4 id="orgb3ecfea">Installing R</h4>
<div class="outline-text-4" id="text-orgba71b69"> <div class="outline-text-4" id="text-orgb3ecfea">
<p> <p>
Beforehand, you need to install the R language and convenient packages Beforehand, you need to install the R language and convenient packages
by running (as root): by running (as root):
...@@ -90,9 +90,9 @@ to run (as root): ...@@ -90,9 +90,9 @@ to run (as root):
</div> </div>
</div> </div>
<div id="outline-container-orgfe3a4ba" class="outline-4"> <div id="outline-container-orgd6fe18e" class="outline-4">
<h4 id="orgfe3a4ba">Installing rstudio</h4> <h4 id="orgd6fe18e">Installing rstudio</h4>
<div class="outline-text-4" id="text-orgfe3a4ba"> <div class="outline-text-4" id="text-orgd6fe18e">
<p> <p>
Rstudio is unfortunately not packaged within debian so the easiest is Rstudio is unfortunately not packaged within debian so the easiest is
to download the corresponding debian package on the <a href="https://www.rstudio.com/products/rstudio/download/#download">Rstudio webpage</a> to download the corresponding debian package on the <a href="https://www.rstudio.com/products/rstudio/download/#download">Rstudio webpage</a>
...@@ -110,9 +110,9 @@ sudo apt-get update ; sudo apt-get -f install <span style="font-weight: bold; fo ...@@ -110,9 +110,9 @@ sudo apt-get update ; sudo apt-get -f install <span style="font-weight: bold; fo
</div> </div>
</div> </div>
</div> </div>
<div id="outline-container-orgdf29b54" class="outline-3"> <div id="outline-container-org337678e" class="outline-3">
<h3 id="orgdf29b54">Mac OSX and Windows</h3> <h3 id="org337678e">Mac OSX and Windows</h3>
<div class="outline-text-3" id="text-orgdf29b54"> <div class="outline-text-3" id="text-org337678e">
<blockquote> <blockquote>
<p> <p>
Some instructions on installing R and knitr must be missing. This Some instructions on installing R and knitr must be missing. This
...@@ -136,13 +136,13 @@ install.packages(<span style="font-style: italic;">"ggplot2"</span>) ...@@ -136,13 +136,13 @@ install.packages(<span style="font-style: italic;">"ggplot2"</span>)
</div> </div>
</div> </div>
</div> </div>
<div id="outline-container-orgd30feb0" class="outline-2"> <div id="outline-container-org150ee9f" class="outline-2">
<h2 id="orgd30feb0">Installing Git</h2> <h2 id="org150ee9f">Installing Git</h2>
<div class="outline-text-2" id="text-orgd30feb0"> <div class="outline-text-2" id="text-org150ee9f">
</div> </div>
<div id="outline-container-org02fa6c2" class="outline-3"> <div id="outline-container-org79b3b23" class="outline-3">
<h3 id="org02fa6c2">Linux (debian, ubuntu)</h3> <h3 id="org79b3b23">Linux (debian, ubuntu)</h3>
<div class="outline-text-3" id="text-org02fa6c2"> <div class="outline-text-3" id="text-org79b3b23">
<p> <p>
We provide here only instructions for debian-based distributions. Feel We provide here only instructions for debian-based distributions. Feel
free to contribute to this document to provide up-to-date information free to contribute to this document to provide up-to-date information
...@@ -158,9 +158,9 @@ Run (as root): ...@@ -158,9 +158,9 @@ Run (as root):
</div> </div>
</div> </div>
</div> </div>
<div id="outline-container-org0611f52" class="outline-3"> <div id="outline-container-org536eda4" class="outline-3">
<h3 id="org0611f52">Mac OSX and Windows</h3> <h3 id="org536eda4">Mac OSX and Windows</h3>
<div class="outline-text-3" id="text-org0611f52"> <div class="outline-text-3" id="text-org536eda4">
<ul class="org-ul"> <ul class="org-ul">
<li style="margin-bottom:0;">Download and install Git from the <a href="https://git-scm.com/downloads">Git website</a>.</li> <li style="margin-bottom:0;">Download and install Git from the <a href="https://git-scm.com/downloads">Git website</a>.</li>
<li style="margin-bottom:0;">Optional Git clients (should not be needed if you work within <li style="margin-bottom:0;">Optional Git clients (should not be needed if you work within
...@@ -180,9 +180,9 @@ Rstudio): ...@@ -180,9 +180,9 @@ Rstudio):
</div> </div>
</div> </div>
</div> </div>
<div id="outline-container-orgabc8626" class="outline-2"> <div id="outline-container-orgbb4bef3" class="outline-2">
<h2 id="orgabc8626">Rstudio and git/github/gitlab</h2> <h2 id="orgbb4bef3">Rstudio and git/github/gitlab</h2>
<div class="outline-text-2" id="text-orgabc8626"> <div class="outline-text-2" id="text-orgbb4bef3">
<blockquote> <blockquote>
<p> <p>
We may want to redo a screencast in French for this We may want to redo a screencast in French for this
...@@ -203,9 +203,9 @@ Alternatively, we can point to: ...@@ -203,9 +203,9 @@ Alternatively, we can point to:
</ul> </ul>
</div> </div>
</div> </div>
<div id="outline-container-org270116a" class="outline-2"> <div id="outline-container-org81cf7bc" class="outline-2">
<h2 id="org270116a">Cheat Sheets</h2> <h2 id="org81cf7bc">Cheat Sheets</h2>
<div class="outline-text-2" id="text-org270116a"> <div class="outline-text-2" id="text-org81cf7bc">
<p> <p>
The Rstudio team has created a lot of good material and tutorials. You The Rstudio team has created a lot of good material and tutorials. You
should definitively look at the <a href="https://www.rstudio.com/resources/cheatsheets/">Cheat sheets webpage</a>. In particular should definitively look at the <a href="https://www.rstudio.com/resources/cheatsheets/">Cheat sheets webpage</a>. In particular
......
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