<h2id="org0b4fddb">1. Jupyter tips and tricks</h2>
<h2id="orgd37ebcc">1. Jupyter tips and tricks</h2>
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<p>
<p>
The following <ahref="https://www.dataquest.io/blog/jupyter-notebook-tips-tricks-shortcuts/">webpage</a> lists several Jupyter tricks (in particular, it
The following <ahref="https://www.dataquest.io/blog/jupyter-notebook-tips-tricks-shortcuts/">webpage</a> lists several Jupyter tricks (in particular, it
illustrates many <code>IPython magic</code> commands) that should improve your
illustrates many <code>IPython magic</code> commands) that should improve your
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@@ -43,9 +44,57 @@ the tricks may have been integrated in the default behavior of Jupyter
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@@ -43,9 +44,57 @@ the tricks may have been integrated in the default behavior of Jupyter
<h3id="orgfa26619">Running R and Python in the same notebook</h3>
<h3id="orge426487">Creating or importing a notebook</h3>
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<p>
Using the Jupyter environment we deployed for this MOOC will allow to
easily access any file from your default GitLab project. There are
situations however where you may want to play with other notebooks.
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<dlclass="org-dl">
<dt>Adding a brand new notebook in a given directory</dt><dd>Simply follow
the following steps:
<olclass="org-ol">
<listyle="margin-bottom:0;">From the menu: <code>File -> Open</code>. You're now in the Jupyter file manager.</li>
<listyle="margin-bottom:0;">Navigate to the directory where you want your notebook to be created.</li>
<listyle="margin-bottom:0;">Then from the top right button: <code>New -> Notebook: Python 3</code>.</li>
<listyle="margin-bottom:0;"><p>
Give your notebook a name from the menu: <code>File -> Rename</code>.
</p>
<p>
N.B.: If you create a file by doing <code>File -> New Notebook ->
Python 3</code>, the new notebook will be created in the current
directory. Moving it afterward is possible but a bit cumbersome
(you'll have to go through the Jupyter file manager by following
the menu <code>File -> Open</code>, then select it, <code>Shut</code> it <code>down</code>, and <code>Move</code>
and/or <code>Rename</code>).
</p></li>
</ol></dd>
<dt>Importing an already existing notebook</dt><dd>If your notebook is
already in your GitLab project, then simply synchronize by using
the <code>Git pull</code> button and use the <code>File -> Open</code> menu. Otherwise,
imagine, you want to import the <ahref="https://app-learninglab.inria.fr/gitlab/moocrr-session1/moocrr-reproducibility-study/blob/master/src/Python3/challenger.ipynb">following notebook</a> from someone
else's repository to re-execute it.
<olclass="org-ol">
<listyle="margin-bottom:0;">Download the file on your computer. E.g., for this <ahref="https://app-learninglab.inria.fr/gitlab/moocrr-session1/moocrr-reproducibility-study/blob/master/src/Python3/challenger.ipynb">GitLab hosted
notebook</a>, click on <code>Open raw</code> (a small <code></></code> within a document icon)
and save (<code>Ctrl-S</code> on most browsers) the content (a long Json text
file).</li>
<listyle="margin-bottom:0;">Open the Jupyter file manager from the menu <code>File -> Open</code> and
navigate to the directory where you want to upload your notebook.</li>
<listyle="margin-bottom:0;">Then from the top right button, <code>Upload</code> the previously downloaded
notebook and confirm the upload.</li>
<listyle="margin-bottom:0;">Open the freshly uploaded notebook through the Jupyter file
