* GitLab CI configuration
Here is the manually filtered list of org and md files that need to be
exported to html with the gitlab pages CI mechanism.

#+BEGIN_SRC txt :tangle html_src_files.lst
./module1/ressources/introduction_to_markdown_fr.org
./module1/ressources/introduction_to_markdown.org
./module1/ressources/sequence1_fr.org
./module1/ressources/sequence2_fr.org
./module1/ressources/sequence3_fr.org
./module1/ressources/sequence5_fr.org
./module1/ressources/sequence1.org
./module1/ressources/sequence2.org

./module2/ressources/maintaining_a_journal.org
./module2/ressources/maintaining_a_journal_fr.org
./module2/ressources/jupyter.org
./module2/ressources/jupyter_fr.org
./module2/ressources/rstudio.org
./module2/ressources/rstudio_fr.org
./module2/ressources/gitlab.org
./module2/ressources/gitlab_fr.org
./module2/ressources/emacs_orgmode.org
./module2/ressources/emacs_orgmode_fr.org
./module2/ressources/module6_examples/README.org
./module2/ressources/module6_examples/README_fr.org
./module2/exo4/stat_activity.org
./module2/slides/ressources.org
./module2/slides/ressources_fr.org


./module3/ressources/iso_date_format.org
./module3/ressources/iso_date_format_fr.org
./module3/ressources/influenza-like-illness-analysis-orgmode+R.org
./module3/ressources/influenza-like-illness-analysis-orgmode+Lisp+Python+R.org
./module3/ressources/influenza-like-illness-analysis-orgmode.org
./module3/ressources/analyse-syndrome-grippal-orgmode.org
./module3/ressources/analyse-syndrome-grippal-orgmode+R.org
./module3/ressources/analyse-syndrome-grippal-orgmode+Lisp+Python+R.org

./module4/ressources/resources_refs.org
./module4/ressources/resources_refs_fr.org
./module4/ressources/exo1.org
./module4/ressources/exo2.org
./module4/ressources/exo3.org
./module4/ressources/resources_environment.org
./module4/ressources/resources_environment_fr.org

./documents/notebooks/notebook_RStudio_SASmarkdown.md
./documents/tuto_git_gtlab/tuto_git_gitlab.md
./documents/tuto_rstudio_gitlab/tuto_rstudio_gitlab.md
./documents/tuto_magit/tuto_magit.md
./documents/tuto_emacs_windows/tuto_emacs_windows.md
./documents/tuto_jupyter_windows/tuto_jupyter_windows.md
#+END_SRC

Here is the yaml file used for CI. All the work is done in a single
perl script.
#+BEGIN_SRC yaml :tangle .gitlab-ci.yml
image: brospars/pandoc-gitlab-ci:latest
pages:
  stage: deploy
  script:
  - pandoc --version
  # - pandoc --help
  # - pandoc --list-input-formats    # Broken as pandoc dates from 2013 on this image! :(
  - for file in `cat html_src_files.lst`; do
        bin/pandoc_fixer.pl ${file};
        echo "Creating"  public/`dirname ${file}`;
        mkdir -p public/`dirname ${file}`;
        mv ${file%.*}.html public/`dirname ${file}`/;
    done
  - cat html_src_files.lst | sed -e 's|.md$|.html|' -e 's|.org$|.html|' -e 's|^./\(.*\)$|- [[./\1]]|' > index.org
  - pandoc -s -f org -t html -o public/index.html index.org
  artifacts:
    paths:
    - public
  only:
  - master
#+END_SRC

* Local Testing
Having to go through a commit/push all the time to check whether it
works or not is a pain. Here a simple mechanism that allows to test
the CI script locally.

#+begin_src perl :results output :file gitlab-ci.sh :exports both
open INPUT, ".gitlab-ci.yml";
my($line);
my($script_found)=0;
while(defined($line=<INPUT>)) {
    if($line=~/\s*script:/) { $script_found=1; next;}
    if($line=~/\s*artifacts:/) { $script_found=0; }
    if($script_found) {
	if($line =~ /^\s*#\s/) { next; }
#	if($line =~ /mv.*public/) { next; }
	$line =~ s/^\s*-\s//g;
	print($line);
    }
}
#+end_src

#+RESULTS:
[[file:gitlab-ci.sh]]

#+begin_src shell :results output :exports both 
chmod +x ./gitlab-ci.sh
./gitlab-ci.sh 
#+end_src

#+RESULTS:
#+begin_example
pandoc 2.2.1
Compiled with pandoc-types 1.17.5.1, texmath 0.11.1, skylighting 0.7.5
Default user data directory: /home/alegrand/.pandoc
Copyright (C) 2006-2018 John MacFarlane
Web:  http://pandoc.org
This is free software; see the source for copying conditions.
There is no warranty, not even for merchantability or fitness
for a particular purpose.
Exporting ./module2/ressources/maintaining_a_journal.org
Creating public/./module2/ressources
Exporting ./module2/ressources/jupyter_fr.org
Creating public/./module2/ressources
Exporting ./module2/ressources/rstudio_fr.org
Creating public/./module2/ressources
Exporting ./module2/ressources/gitlab_fr.org
Creating public/./module2/ressources
Exporting ./module2/ressources/emacs_orgmode_fr.org
Creating public/./module2/ressources
Exporting ./module2/ressources/jupyter.org
Creating public/./module2/ressources
Exporting ./module2/ressources/emacs_orgmode.org
Creating public/./module2/ressources
Exporting ./module2/ressources/maintaining_a_journal_fr.org
Creating public/./module2/ressources
Exporting ./module2/ressources/rstudio.org
Creating public/./module2/ressources
Exporting ./module2/ressources/gitlab.org
Creating public/./module2/ressources
Exporting ./module2/ressources/orgmode_examples/README.org
Creating public/./module2/ressources/orgmode_examples
Exporting ./module2/ressources/orgmode_examples/README_fr.org
Creating public/./module2/ressources/orgmode_examples
Exporting ./module2/exo4/stat_activity.org
Creating public/./module2/exo4
Exporting ./module2/slides/ressources_fr.org
Creating public/./module2/slides
Exporting ./module2/slides/ressources.org
Creating public/./module2/slides
Exporting ./module3/ressources/iso_date_format.org
Creating public/./module3/ressources
Exporting ./module3/ressources/iso_date_format_fr.org
Creating public/./module3/ressources
Exporting ./module3/ressources/influenza-like-illness-analysis-orgmode+R.org
Creating public/./module3/ressources
Exporting ./module3/ressources/influenza-like-illness-analysis-orgmode+Lisp+Python+R.org
Creating public/./module3/ressources
Exporting ./module3/ressources/influenza-like-illness-analysis-orgmode.org
Creating public/./module3/ressources
Exporting ./module3/ressources/analyse-syndrome-grippal-orgmode.org
Creating public/./module3/ressources
Exporting ./module3/ressources/analyse-syndrome-grippal-orgmode+R.org
Creating public/./module3/ressources
Exporting ./module3/ressources/analyse-syndrome-grippal-orgmode+Lisp+Python+R.org
Creating public/./module3/ressources
Exporting ./module1/ressources/Module1_1_MaterielSupplementaire_fr.org
Creating public/./module1/ressources
Exporting ./module1/ressources/Module1_2_MaterielSupplementaire_fr.org
Creating public/./module1/ressources
Exporting ./module1/ressources/Module1_3_MaterielSupplementaire_fr.org
Creating public/./module1/ressources
Exporting ./module1/ressources/Module1_5_MaterielSupplementaire_fr.org
Creating public/./module1/ressources
Exporting ./module1/ressources/Module1_1_SupplementaryMaterial.org
Creating public/./module1/ressources
Exporting ./module1/ressources/Module1_2_SupplementaryMaterial.org
Creating public/./module1/ressources
Exporting ./module1/ressources/introduction_to_markdown_fr.org
Creating public/./module1/ressources
Exporting ./module1/ressources/introduction_to_markdown.org
Creating public/./module1/ressources
Exporting ./module1/ressources/module1_supplementary_material.org
Creating public/./module1/ressources
Exporting ./module1/ressources/module1_additionalRessources.md
Creating public/./module1/ressources
Exporting ./module1/ressources/sequence3_fr.org
Creating public/./module1/ressources
Exporting ./module1/ressources/sequence5_fr.org
Creating public/./module1/ressources
Exporting ./module1/ressources/sequence2_fr.org
Creating public/./module1/ressources
Exporting ./module1/ressources/sequence1_fr.org
Creating public/./module1/ressources
Exporting ./module4/ressources/resources_refs.org
Creating public/./module4/ressources
Exporting ./module4/ressources/resources_refs_fr.org
Creating public/./module4/ressources
Exporting ./module4/ressources/exo1.org
Creating public/./module4/ressources
Exporting ./module4/ressources/exo2.org
Creating public/./module4/ressources
Exporting ./module4/ressources/exo3.org
Creating public/./module4/ressources
Exporting ./module4/ressources/resources_environment.org
Creating public/./module4/ressources
Exporting ./module4/ressources/resources_environment_fr.org
Creating public/./module4/ressources
Exporting ./documents/notebooks/notebook_RStudio_SASmarkdown.md
Creating public/./documents/notebooks
Exporting ./documents/tuto_git_gtlab/tuto_git_gitlab.md
Creating public/./documents/tuto_git_gtlab
Exporting ./documents/tuto_rstudio_gitlab/tuto_rstudio_gitlab.md
Creating public/./documents/tuto_rstudio_gitlab
Exporting ./documents/tuto_magit/tuto_magit.md
Creating public/./documents/tuto_magit
Exporting ./documents/tuto_emacs_windows/tuto_emacs_windows.md
Creating public/./documents/tuto_emacs_windows
Exporting ./documents/tuto_jupyter_windows/tuto_jupyter_windows.md
Creating public/./documents/tuto_jupyter_windows
#+end_example