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moocrr-reproducibility-study
Commit 8a5d424d authored by Helene31's avatar Helene31
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Merge branch 'master' of... 

Merge branch 'master' of https://app-learninglab.inria.fr/moocrr/gitlab/moocrr-session3/moocrr-reproducibility-study
parents 4afaffe3 527f6951
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README.md
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......@@ -49,4 +49,8 @@ Non functional (expected values are $`5.085`$ and $`-0.1156`$)
| -------- | ---------------- | ------------------------------------------------------------- | ------- | ---------------------------- | ------------- | ---------- | ---------- | --------- | ---------- | ----------------------------------------------------------------- | ----------- |
| R | 3.5.1 | ggplot2 3.0.0 | RStudio | Debian GNU/Linux buster/sid | Identical | Identical | Identical | Identical | Identical | [Rmd](src/R/challenger.Rmd), [pdf](src/R/challenger_debian_alegrand.pdf) | A. Legrand |
| Python | 3.6.4 | statsmodels 0.9.0 numpy 1.13.3 pandas 0.22.0 matplotlib 2.2.2 | Jupyter | Linux Ubuntu 4.4.0-116-generic | Identical | Identical | Identical | Identical | Similar | [ipynb](src/Python3/challenger.ipynb), [pdf](src/Python3/challenger_ubuntuMOOC_alegrand.pdf) | A. Legrand |
| R | 3.5.1 | ggplot2 3.0.0 | RSrudio | Windows >= 8 x64 (build 9200) | Identical | Identical | Identical | Identical | Similar | [Rmd](https://app-learninglab.inria.fr/moocrr/gitlab/8517fa92e97b3a318e653caefbfde6b5/mooc-rr/blob/master/module4/MOOC_exercice_module4.Rmd), [Pdf](https://app-learninglab.inria.fr/moocrr/gitlab/8517fa92e97b3a318e653caefbfde6b5/mooc-rr/blob/master/module4/MOOC_exercice_module4.pdf) | M. Saubin |
| Python | 3.6.4 | statsmodels 0.9.0 numpy 1.15.2 pandas 0.22.0 matplotlib 2.2.3 | Jupyter | Linux Ubuntu 4.4.0-164-generic | Identical | Identical | Identical | Identical | Similar | [ipynb](module4/challenger_Python_ipynb.ipynb), [pdf](module4/challenger_Python_ipynb.pdf) |2992438755465b7fe3afd7856bde0599|
| R | 3.4.4 | ggplot2_3.3.0 | RStudio | Linux Mint 19 | Identical | Identical | Identical | Identical | Identical | [Rmd](https://app-learninglab.inria.fr/moocrr/gitlab/b2c48a7ab4afbff5f4d26650b09eb6b4/mooc-rr/blob/master/module4/challenger_reexecuted.Rmd), [html](https://app-learninglab.inria.fr/moocrr/gitlab/b2c48a7ab4afbff5f4d26650b09eb6b4/mooc-rr/blob/master/module4/challenger_reexecuted.html) | b2c48a7ab4afbff5f4d26650b09eb6b4 |
| Python | 3.6.4 | statsmodels 0.9.0 numpy 1.15.2 pandas 0.22.0 matplotlib 2.2.3 | Jupyter | Linux Ubuntu 4.4.0-164-generic | Identical | Identical | Identical | Identical | Similar | [ipynb](https://app-learninglab.inria.fr/moocrr/gitlab/34ea1ee296fc8711adf020d9cc2cb571/mooc-rr/blob/master/module4/challenger.ipynb), [pdf](https://app-learninglab.inria.fr/moocrr/gitlab/34ea1ee296fc8711adf020d9cc2cb571/mooc-rr/blob/master/module4/challenger.pdf) | 34ea1ee296fc8711adf020d9cc2cb571 |
| Matlab | 9.6.0.1072779 (R2019a) | | Matlab Live Script | Windows 10.0.18362 | Identical | Identical | Non Functionnal | Similar | Did not succeed | [mlx](https://app-learninglab.inria.fr/moocrr/gitlab/34ea1ee296fc8711adf020d9cc2cb571/mooc-rr/blob/master/module4/challenger.mlx), [pdf](https://app-learninglab.inria.fr/moocrr/gitlab/34ea1ee296fc8711adf020d9cc2cb571/mooc-rr/blob/master/module4/challenger_matlab.pdf) | 34ea1ee296fc8711adf020d9cc2cb571 |
\ No newline at end of file
src/Python3/challenger.ipynb
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......@@ -434,7 +434,7 @@
}
],
"source": [
"data = pd.read_csv(\"https://app-learninglab.inria.fr/gitlab/moocrr-session1/moocrr-reproducibility-study/raw/master/data/shuttle.csv\")\n",
"data = pd.read_csv(\"https://app-learninglab.inria.fr/moocrr/gitlab/moocrr-session3/moocrr-reproducibility-study/blob/master/data/shuttle.csv\")\n",
"data"
]
},
......@@ -751,7 +751,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"**I think I have managed to correctly compute and plot the uncertainty of my prediction.** Although the shaded area seems very similar to [the one obtained by with R](https://app-learninglab.inria.fr/gitlab/moocrr-session1/moocrr-reproducibility-study/raw/5c9dbef11b4d7638b7ddf2ea71026e7bf00fcfb0/challenger.pdf), I can spot a few differences (e.g., the blue point for temperature 63 is outside)... Could this be a numerical error ? Or a difference in the statistical method ? It is not clear which one is \"right\"."
"**I think I have managed to correctly compute and plot the uncertainty of my prediction.** Although the shaded area seems very similar to [the one obtained by with R](https://app-learninglab.inria.fr/moocrr/gitlab/moocrr-session3/moocrr-reproducibility-study/tree/master/challenger.pdf), I can spot a few differences (e.g., the blue point for temperature 63 is outside)... Could this be a numerical error ? Or a difference in the statistical method ? It is not clear which one is \"right\"."
]
}
],
......
src/Python3/challenger_Python_ipynb.ipynb
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......@@ -424,7 +424,7 @@
}
],
"source": [
"data = pd.read_csv(\"https://app-learninglab.inria.fr/gitlab/moocrr-session1/moocrr-reproducibility-study/raw/master/data/shuttle.csv\")\n",
"data = pd.read_csv(\"https://app-learninglab.inria.fr/moocrr/gitlab/moocrr-session3/moocrr-reproducibility-study/blob/master/data/data/shuttle.csv\")\n",
"data"
]
},
......@@ -833,7 +833,7 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"**I think I have managed to correctly compute and plot the uncertainty of my prediction.** Although the shaded area seems very similar to [the one obtained by with R](https://app-learninglab.inria.fr/gitlab/moocrr-session1/moocrr-reproducibility-study/raw/5c9dbef11b4d7638b7ddf2ea71026e7bf00fcfb0/challenger.pdf), I can spot a few differences (e.g., the blue point for temperature 63 is outside)... Could this be a numerical error ? Or a difference in the statistical method ? It is not clear which one is \"right\"."
"**I think I have managed to correctly compute and plot the uncertainty of my prediction.** Although the shaded area seems very similar to [the one obtained by with R](https://app-learninglab.inria.fr/moocrr/gitlab/moocrr-session3/moocrr-reproducibility-study/tree/master/challenger.pdf), I can spot a few differences (e.g., the blue point for temperature 63 is outside)... Could this be a numerical error ? Or a difference in the statistical method ? It is not clear which one is \"right\"."
]
}
],
......
src/Python3/challenger_Python_org.org
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......@@ -55,7 +55,7 @@ print_imported_modules()
Let's start by reading data.
#+begin_src python :results output :session :exports both
data = pd.read_csv("https://app-learninglab.inria.fr/gitlab/moocrr-session1/moocrr-reproducibility-study/raw/master/data/shuttle.csv")
data = pd.read_csv("https://app-learninglab.inria.fr/moocrr/gitlab/moocrr-session3/moocrr-reproducibility-study/tree/master/data/shuttle.csv")
print(data)
#+end_src
......@@ -195,7 +195,7 @@ matplot_lib_filename
**I think I have managed to correctly compute and plot the uncertainty
of my prediction.** Although the shaded area seems very similar to
[the one obtained by with
R](https://app-learninglab.inria.fr/gitlab/moocrr-session1/moocrr-reproducibility-study/raw/5c9dbef11b4d7638b7ddf2ea71026e7bf00fcfb0/challenger.pdf),
R](https://app-learninglab.inria.fr/moocrr/gitlab/moocrr-session3/moocrr-reproducibility-study/tree/master/challenger.pdf),
I can spot a few differences (e.g., the blue point for temperature
63 is outside)... Could this be a numerical error ? Or a difference
in the statistical method ? It is not clear which one is "right".
src/R/challenger.Rmd
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......@@ -26,7 +26,7 @@ devtools::session_info()
# Loading and inspecting data
Let's start by reading data:
```{r}
data = read.csv("https://app-learninglab.inria.fr/gitlab/moocrr-session1/moocrr-reproducibility-study/raw/master/data/shuttle.csv",header=T)
data = read.csv("https://app-learninglab.inria.fr/moocrr/gitlab/moocrr-session3/moocrr-reproducibility-study/tree/master/data/shuttle.csv",header=T)
data
```
......
src/R/challenger_R_org.org
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......@@ -88,7 +88,7 @@ Packages-----------------------------------------------------------------------
* Loading and inspecting data
Let's start by reading data:
#+begin_src R :results output :session *R* :exports both
data = read.csv("https://app-learninglab.inria.fr/gitlab/moocrr-session1/moocrr-reproducibility-study/raw/master/data/shuttle.csv")
data = read.csv("https://app-learninglab.inria.fr/moocrr/gitlab/moocrr-session3/moocrr-reproducibility-study/tree/master/data/shuttle.csv")
data
#+end_src
......
src/R/challenger_R_org_Windows_64bits.org
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......@@ -130,7 +130,7 @@ devtools::session_info()
* Loading and inspecting data
Let's start by reading data:
#+begin_src R :results output :session *R* :exports both
data = read.csv("https://app-learninglab.inria.fr/gitlab/moocrr-session1/moocrr-reproducibility-study/raw/master/data/shuttle.csv")
data = read.csv("https://app-learninglab.inria.fr/moocrr/gitlab/moocrr-session3/moocrr-reproducibility-study/tree/master/data/shuttle.csv")
data
#+end_src
......
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