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Commit 0d17ab4f authored by 75c80a38547344d7d76c3a6fb64a936b's avatar 75c80a38547344d7d76c3a6fb64a936b
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module3/exo1/analyse-syndrome-grippal.ipynb
View file @ 0d17ab4f
...@@ -9,7 +9,7 @@ ...@@ -9,7 +9,7 @@
}, },
{ {
"cell_type": "code", "cell_type": "code",
"execution_count": 11, "execution_count": 1,
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
...@@ -30,16 +30,29 @@ ...@@ -30,16 +30,29 @@
}, },
{ {
"cell_type": "code", "cell_type": "code",
"execution_count": 12, "execution_count": 2,
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"data_url = \"http://www.sentiweb.fr/datasets/incidence-PAY-3.csv\"\n", "data_url = \"http://www.sentiweb.fr/datasets/incidence-PAY-3.csv\""
"local_file = 'local_data.csv' \n", ]
"if not os.path.exists(local_file):\n", },
" urlretrieve(data_url, local_file)\n", {
"data_url = local_file\n", "cell_type": "markdown",
" " "metadata": {},
"source": [
"Pour nous protéger contre une éventuelle disparition ou modification du serveur du Réseau Sentinelles, nous faisons une copie locale de ce jeux de données que nous préservons avec notre analyse. Il est inutile et même risquée de télécharger les données à chaque exécution, car dans le cas d'une panne nous pourrions remplacer nos données par un fichier défectueux. Pour cette raison, nous téléchargeons les données seulement si la copie locale n'existe pas."
]
},
{
"cell_type": "code",
"execution_count": 3,
"metadata": {},
"outputs": [],
"source": [
"data_file = 'syndrome-grippal.csv' \n",
"if not os.path.exists(data_file):\n",
" urlretrieve(data_url, data_file)"
] ]
}, },
{ {
...@@ -66,7 +79,7 @@ ...@@ -66,7 +79,7 @@
}, },
{ {
"cell_type": "code", "cell_type": "code",
"execution_count": 13, "execution_count": 4,
"metadata": {}, "metadata": {},
"outputs": [ "outputs": [
{ {
...@@ -1031,13 +1044,13 @@ ...@@ -1031,13 +1044,13 @@
"[2129 rows x 10 columns]" "[2129 rows x 10 columns]"
] ]
}, },
"execution_count": 13, "execution_count": 4,
"metadata": {}, "metadata": {},
"output_type": "execute_result" "output_type": "execute_result"
} }
], ],
"source": [ "source": [
"raw_data = pd.read_csv(data_url, skiprows=1)\n", "raw_data = pd.read_csv(data_file, skiprows=1)\n",
"raw_data" "raw_data"
] ]
}, },
...@@ -1050,7 +1063,7 @@ ...@@ -1050,7 +1063,7 @@
}, },
{ {
"cell_type": "code", "cell_type": "code",
"execution_count": 4, "execution_count": 5,
"metadata": {}, "metadata": {},
"outputs": [ "outputs": [
{ {
...@@ -1112,7 +1125,7 @@ ...@@ -1112,7 +1125,7 @@
"1892 FR France " "1892 FR France "
] ]
}, },
"execution_count": 4, "execution_count": 5,
"metadata": {}, "metadata": {},
"output_type": "execute_result" "output_type": "execute_result"
} }
...@@ -1130,7 +1143,7 @@ ...@@ -1130,7 +1143,7 @@
}, },
{ {
"cell_type": "code", "cell_type": "code",
"execution_count": 5, "execution_count": 6,
"metadata": {}, "metadata": {},
"outputs": [ "outputs": [
{ {
...@@ -2095,7 +2108,7 @@ ...@@ -2095,7 +2108,7 @@
"[2128 rows x 10 columns]" "[2128 rows x 10 columns]"
] ]
}, },
"execution_count": 5, "execution_count": 6,
"metadata": {}, "metadata": {},
"output_type": "execute_result" "output_type": "execute_result"
} }
...@@ -2125,7 +2138,7 @@ ...@@ -2125,7 +2138,7 @@
}, },
{ {
"cell_type": "code", "cell_type": "code",
"execution_count": 6, "execution_count": 7,
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
...@@ -2155,7 +2168,7 @@ ...@@ -2155,7 +2168,7 @@
}, },
{ {
"cell_type": "code", "cell_type": "code",
"execution_count": 7, "execution_count": 8,
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
...@@ -2180,7 +2193,7 @@ ...@@ -2180,7 +2193,7 @@
}, },
{ {
"cell_type": "code", "cell_type": "code",
"execution_count": 8, "execution_count": 9,
"metadata": {}, "metadata": {},
"outputs": [ "outputs": [
{ {
...@@ -2208,7 +2221,7 @@ ...@@ -2208,7 +2221,7 @@
}, },
{ {
"cell_type": "code", "cell_type": "code",
"execution_count": 9, "execution_count": 10,
"metadata": {}, "metadata": {},
"outputs": [ "outputs": [
{ {
...@@ -2218,7 +2231,7 @@ ...@@ -2218,7 +2231,7 @@
"traceback": [ "traceback": [
"\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
"\u001b[0;31mTypeError\u001b[0m Traceback (most recent call last)", "\u001b[0;31mTypeError\u001b[0m Traceback (most recent call last)",
"\u001b[0;32m<ipython-input-9-0966cd984262>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m\u001b[0m\n\u001b[0;32m----> 1\u001b[0;31m \u001b[0msorted_data\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m'inc'\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mplot\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m", "\u001b[0;32m<ipython-input-10-0966cd984262>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m\u001b[0m\n\u001b[0;32m----> 1\u001b[0;31m \u001b[0msorted_data\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m'inc'\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mplot\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m",
"\u001b[0;32m/opt/conda/lib/python3.6/site-packages/pandas/plotting/_core.py\u001b[0m in \u001b[0;36m__call__\u001b[0;34m(self, kind, ax, figsize, use_index, title, grid, legend, style, logx, logy, loglog, xticks, yticks, xlim, ylim, rot, fontsize, colormap, table, yerr, xerr, label, secondary_y, **kwds)\u001b[0m\n\u001b[1;32m 2501\u001b[0m \u001b[0mcolormap\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mcolormap\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mtable\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mtable\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0myerr\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0myerr\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 2502\u001b[0m \u001b[0mxerr\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mxerr\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mlabel\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mlabel\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0msecondary_y\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0msecondary_y\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 2503\u001b[0;31m **kwds)\n\u001b[0m\u001b[1;32m 2504\u001b[0m \u001b[0m__call__\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m__doc__\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mplot_series\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m__doc__\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 2505\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n", "\u001b[0;32m/opt/conda/lib/python3.6/site-packages/pandas/plotting/_core.py\u001b[0m in \u001b[0;36m__call__\u001b[0;34m(self, kind, ax, figsize, use_index, title, grid, legend, style, logx, logy, loglog, xticks, yticks, xlim, ylim, rot, fontsize, colormap, table, yerr, xerr, label, secondary_y, **kwds)\u001b[0m\n\u001b[1;32m 2501\u001b[0m \u001b[0mcolormap\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mcolormap\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mtable\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mtable\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0myerr\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0myerr\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 2502\u001b[0m \u001b[0mxerr\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mxerr\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mlabel\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mlabel\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0msecondary_y\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0msecondary_y\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 2503\u001b[0;31m **kwds)\n\u001b[0m\u001b[1;32m 2504\u001b[0m \u001b[0m__call__\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m__doc__\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mplot_series\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m__doc__\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 2505\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n",
"\u001b[0;32m/opt/conda/lib/python3.6/site-packages/pandas/plotting/_core.py\u001b[0m in \u001b[0;36mplot_series\u001b[0;34m(data, kind, ax, figsize, use_index, title, grid, legend, style, logx, logy, loglog, xticks, yticks, xlim, ylim, rot, fontsize, colormap, table, yerr, xerr, label, secondary_y, **kwds)\u001b[0m\n\u001b[1;32m 1925\u001b[0m \u001b[0myerr\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0myerr\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mxerr\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mxerr\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1926\u001b[0m \u001b[0mlabel\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mlabel\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0msecondary_y\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0msecondary_y\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1927\u001b[0;31m **kwds)\n\u001b[0m\u001b[1;32m 1928\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1929\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n", "\u001b[0;32m/opt/conda/lib/python3.6/site-packages/pandas/plotting/_core.py\u001b[0m in \u001b[0;36mplot_series\u001b[0;34m(data, kind, ax, figsize, use_index, title, grid, legend, style, logx, logy, loglog, xticks, yticks, xlim, ylim, rot, fontsize, colormap, table, yerr, xerr, label, secondary_y, **kwds)\u001b[0m\n\u001b[1;32m 1925\u001b[0m \u001b[0myerr\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0myerr\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mxerr\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mxerr\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1926\u001b[0m \u001b[0mlabel\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mlabel\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0msecondary_y\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0msecondary_y\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1927\u001b[0;31m **kwds)\n\u001b[0m\u001b[1;32m 1928\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1929\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n",
"\u001b[0;32m/opt/conda/lib/python3.6/site-packages/pandas/plotting/_core.py\u001b[0m in \u001b[0;36m_plot\u001b[0;34m(data, x, y, subplots, ax, kind, **kwds)\u001b[0m\n\u001b[1;32m 1727\u001b[0m \u001b[0mplot_obj\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mklass\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mdata\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0msubplots\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0msubplots\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0max\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0max\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mkind\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mkind\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m**\u001b[0m\u001b[0mkwds\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1728\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1729\u001b[0;31m \u001b[0mplot_obj\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mgenerate\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 1730\u001b[0m \u001b[0mplot_obj\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mdraw\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1731\u001b[0m \u001b[0;32mreturn\u001b[0m \u001b[0mplot_obj\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mresult\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", "\u001b[0;32m/opt/conda/lib/python3.6/site-packages/pandas/plotting/_core.py\u001b[0m in \u001b[0;36m_plot\u001b[0;34m(data, x, y, subplots, ax, kind, **kwds)\u001b[0m\n\u001b[1;32m 1727\u001b[0m \u001b[0mplot_obj\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mklass\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mdata\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0msubplots\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0msubplots\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0max\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0max\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mkind\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mkind\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m**\u001b[0m\u001b[0mkwds\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1728\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1729\u001b[0;31m \u001b[0mplot_obj\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mgenerate\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 1730\u001b[0m \u001b[0mplot_obj\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mdraw\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 1731\u001b[0m \u001b[0;32mreturn\u001b[0m \u001b[0mplot_obj\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mresult\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
......
module3/exo1/syndrome-grippal.csv 0 → 100644
View file @ 0d17ab4f
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