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76843f831e4745827d5352cd0489c7c2
mooc-rr
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d05e40ab
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d05e40ab
authored
Mar 10, 2021
by
76843f831e4745827d5352cd0489c7c2
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module2/exo1/toy_document_orgmode_R_en.org
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d05e40ab
#+TITLE:
Your title
#+TITLE:
On the computation of pi
#+AUTHOR: Your name
#+AUTHOR: Your name
#+DATE: Today's date
#+DATE: Today's date
#+LANGUAGE: en
#+LANGUAGE: en
...
@@ -18,21 +18,13 @@ Emacs, this document can easily be exported to HTML, PDF, and Office
...
@@ -18,21 +18,13 @@ Emacs, this document can easily be exported to HTML, PDF, and Office
formats. For more information on org-mode, see
formats. For more information on org-mode, see
https://orgmode.org/guide/.
https://orgmode.org/guide/.
When you type the shortcut =C-c C-e h o=, this document will be
exported as HTML. All the code in it will be re-executed, and the
results will be retrieved and included into the exported document. If
you do not want to re-execute all code each time, you can delete the #
and the space before ~#+PROPERTY:~ in the header of this document.
Like we showed in the video, R code is included as follows (and is
exxecuted by typing ~C-c C-c~):
#+begin_src R :results output :exports both
#+begin_src R :results output :exports both
p
rint("Hello world!")
p
i
#+end_src
#+end_src
#+RESULTS:
#+RESULTS:
: [1]
"Hello world!"
: [1]
3.141593
And now the same but in an R session. This is the most frequent
And now the same but in an R session. This is the most frequent
situation, because R is really an interactive language. With a
situation, because R is really an interactive language. With a
...
@@ -41,41 +33,31 @@ persistent from one code block to the next. The code is still executed
...
@@ -41,41 +33,31 @@ persistent from one code block to the next. The code is still executed
using ~C-c C-c~.
using ~C-c C-c~.
#+begin_src R :results output :session *R* :exports both
#+begin_src R :results output :session *R* :exports both
summary(cars)
set.seed(42)
N = 100000
x = runif(N)
theta = pi/2*runif(N)
2/(mean(x+sin(theta)>1))
#+end_src
#+end_src
#+RESULTS:
#+RESULTS:
: speed dist
: [1] 3.14327
: Min. : 4.0 Min. : 2.00
: 1st Qu.:12.0 1st Qu.: 26.00
: Median :15.0 Median : 36.00
: Mean :15.4 Mean : 42.98
: 3rd Qu.:19.0 3rd Qu.: 56.00
: Max. :25.0 Max. :120.00
Finally, an example for graphical output:
#+begin_src R :results output graphics :file "./cars.png" :exports results :width 600 :height 400 :session *R*
plot(cars)
#+end_src
#+RESULTS:
#+begin_src R :results output graphics :file "./cars.png" :exports results :width 600 :height 400 :session *R*
[[file:./cars.png]]
set.seed(42)
N = 1000
df = data.frame(X = runif(N), Y = runif(N))
df$Accept = (df$X**2 + df$Y**2 <=1)
library(ggplot2)
ggplot(df, aes(x=X,y=Y,color=Accept)) + geom_point(alpha=.2) + coord_fixed() + theme_bw()
Note the parameter ~:exports results~, which indicates that the code
#+end_src
will not appear in the exported document. We recommend that in the
context of this MOOC, you always leave this parameter setting as
~:exports both~, because we want your analyses to be perfectly
transparent and reproducible.
Watch out: the figure generated by the code block is /not/ stored in
#+begin_src R :results output :session *R* :exports both
the org document. It's a plain file, here named ~cars.png~. You have
4*mean(df$Accept)
to commit it explicitly if you want your analysis to be legible and
#+end_src
understandable on GitLab.
Finally, don't forget that we provide in the resource section of this
#+RESULTS:
MOOC a configuration with a few keyboard shortcuts that allow you to
: [1] 3.156
quickly create code blocks in R by typing ~<r~ or ~<R~ followed by
~Tab~.
Now it's your turn! You can delete all this information and replace it
by your computational document.
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