Commit 4d03c594 authored by Arnaud Legrand's avatar Arnaud Legrand

make

parent a9f144f4
...@@ -4,31 +4,31 @@ ...@@ -4,31 +4,31 @@
<h2>Table of Contents</h2> <h2>Table of Contents</h2>
<div id="text-table-of-contents"> <div id="text-table-of-contents">
<ul style="margin:0 0;"> <ul style="margin:0 0;">
<li style="margin-bottom:0;"><a href="#org5cd0680">Additional Jupyter resources or tricks</a> <li style="margin-bottom:0;"><a href="#orgbc72472">Additional Jupyter resources or tricks</a>
<ul style="margin:0 0;"> <ul style="margin:0 0;">
<li style="margin-bottom:0;"><a href="#org7fc56ab">Tips and tricks</a></li> <li style="margin-bottom:0;"><a href="#org1be8a88">Tips and tricks</a></li>
<li style="margin-bottom:0;"><a href="#org85c1748">Running R and Python in the same notebook</a></li> <li style="margin-bottom:0;"><a href="#orga192b96">Running R and Python in the same notebook</a></li>
<li style="margin-bottom:0;"><a href="#orgc80dcea">Exporting a notebook</a></li> <li style="margin-bottom:0;"><a href="#orgb30f3ee">Exporting a notebook</a></li>
</ul> </ul>
</li> </li>
<li style="margin-bottom:0;"><a href="#orgfcddd6d">Installing Jupyter on your own machine</a> <li style="margin-bottom:0;"><a href="#orgd2ff654">Installing Jupyter on your own machine</a>
<ul style="margin:0 0;"> <ul style="margin:0 0;">
<li style="margin-bottom:0;"><a href="#org3eb7e0c">Installing jupyter</a></li> <li style="margin-bottom:0;"><a href="#org23f8703">Installing jupyter</a></li>
<li style="margin-bottom:0;"><a href="#org807e282">Exporting your notebooks with latex</a></li> <li style="margin-bottom:0;"><a href="#orge0aee6c">Exporting your notebooks with latex</a></li>
<li style="margin-bottom:0;"><a href="#org0359fd8">Interesting extensions to improve notebook readability</a></li> <li style="margin-bottom:0;"><a href="#org4f61d38">Interesting extensions to improve notebook readability</a></li>
</ul> </ul>
</li> </li>
</ul> </ul>
</div> </div>
</div> </div>
<div id="outline-container-org5cd0680" class="outline-2"> <div id="outline-container-orgbc72472" class="outline-2">
<h2 id="org5cd0680">Additional Jupyter resources or tricks</h2> <h2 id="orgbc72472">Additional Jupyter resources or tricks</h2>
<div class="outline-text-2" id="text-org5cd0680"> <div class="outline-text-2" id="text-orgbc72472">
</div> </div>
<div id="outline-container-org7fc56ab" class="outline-3"> <div id="outline-container-org1be8a88" class="outline-3">
<h3 id="org7fc56ab">Tips and tricks</h3> <h3 id="org1be8a88">Tips and tricks</h3>
<div class="outline-text-3" id="text-org7fc56ab"> <div class="outline-text-3" id="text-org1be8a88">
<p> <p>
The following <a href="https://www.dataquest.io/blog/jupyter-notebook-tips-tricks-shortcuts/">webpage</a> lists several Jupyter tricks (in particular, it The following <a href="https://www.dataquest.io/blog/jupyter-notebook-tips-tricks-shortcuts/">webpage</a> lists several Jupyter tricks (in particular, it
illustrates many <code>Ipython magic</code> commands) that should improve your illustrates many <code>Ipython magic</code> commands) that should improve your
...@@ -38,9 +38,9 @@ now). ...@@ -38,9 +38,9 @@ now).
</p> </p>
</div> </div>
</div> </div>
<div id="outline-container-org85c1748" class="outline-3"> <div id="outline-container-orga192b96" class="outline-3">
<h3 id="org85c1748">Running R and Python in the same notebook</h3> <h3 id="orga192b96">Running R and Python in the same notebook</h3>
<div class="outline-text-3" id="text-org85c1748"> <div class="outline-text-3" id="text-orga192b96">
<p> <p>
The best solution to this is to install rpy2. On my machine, I have The best solution to this is to install rpy2. On my machine, I have
installed the <code>python3-rpy2</code> debian package with <code>apt-get install</code>. E.g., installed the <code>python3-rpy2</code> debian package with <code>apt-get install</code>. E.g.,
...@@ -88,9 +88,9 @@ plot(df) ...@@ -88,9 +88,9 @@ plot(df)
</ol> </ol>
</div> </div>
</div> </div>
<div id="outline-container-orgc80dcea" class="outline-3"> <div id="outline-container-orgb30f3ee" class="outline-3">
<h3 id="orgc80dcea">Exporting a notebook</h3> <h3 id="orgb30f3ee">Exporting a notebook</h3>
<div class="outline-text-3" id="text-orgc80dcea"> <div class="outline-text-3" id="text-orgb30f3ee">
<p> <p>
Obviously, you can convert to html or pdf using the using the <code>File &gt; Obviously, you can convert to html or pdf using the using the <code>File &gt;
Download as &gt; HTML</code> (or <code>PDF</code>) menu option. This can also be done from Download as &gt; HTML</code> (or <code>PDF</code>) menu option. This can also be done from
...@@ -117,19 +117,19 @@ taste. ...@@ -117,19 +117,19 @@ taste.
</div> </div>
</div> </div>
</div> </div>
<div id="outline-container-orgfcddd6d" class="outline-2"> <div id="outline-container-orgd2ff654" class="outline-2">
<h2 id="orgfcddd6d">Installing Jupyter on your own machine</h2> <h2 id="orgd2ff654">Installing Jupyter on your own machine</h2>
<div class="outline-text-2" id="text-orgfcddd6d"> <div class="outline-text-2" id="text-orgd2ff654">
</div> </div>
<div id="outline-container-org3eb7e0c" class="outline-3"> <div id="outline-container-org23f8703" class="outline-3">
<h3 id="org3eb7e0c">Installing jupyter</h3> <h3 id="org23f8703">Installing jupyter</h3>
<div class="outline-text-3" id="text-org3eb7e0c"> <div class="outline-text-3" id="text-org23f8703">
<p> <p>
Follow these instructions if you wish to have a similar Jupyter environment on you own machine. Follow these instructions if you wish to have a similar Jupyter environment on you own machine.
</p> </p>
<p> <p>
First, download and install <a href="https://conda.io/miniconda.html">Miniconda latest version</a>. We use Miniconda version <code>4.5.4</code> on our server .<br /> First, download and install <a href="https://conda.io/miniconda.html">Miniconda latest version</a>. We use Miniconda version <code>4.5.4</code> and Python version <code>3.6</code> on our server .<br />
Miniconda is a light version of Anaconda which includes Python, the Jupyter Notebook, and other commonly used packages for scientific computing and data science. Miniconda is a light version of Anaconda which includes Python, the Jupyter Notebook, and other commonly used packages for scientific computing and data science.
</p> </p>
...@@ -151,9 +151,9 @@ jupyter notebook ...@@ -151,9 +151,9 @@ jupyter notebook
</div> </div>
</div> </div>
<div id="outline-container-org807e282" class="outline-3"> <div id="outline-container-orge0aee6c" class="outline-3">
<h3 id="org807e282">Exporting your notebooks with latex</h3> <h3 id="orge0aee6c">Exporting your notebooks with latex</h3>
<div class="outline-text-3" id="text-org807e282"> <div class="outline-text-3" id="text-orge0aee6c">
<p> <p>
Here is what I had to install on my recent debian machine to make sure Here is what I had to install on my recent debian machine to make sure
the notebook export via latex works: the notebook export via latex works:
...@@ -166,9 +166,9 @@ sudo apt-get install texlive-xetex ...@@ -166,9 +166,9 @@ sudo apt-get install texlive-xetex
</div> </div>
</div> </div>
<div id="outline-container-org0359fd8" class="outline-3"> <div id="outline-container-org4f61d38" class="outline-3">
<h3 id="org0359fd8">Interesting extensions to improve notebook readability</h3> <h3 id="org4f61d38">Interesting extensions to improve notebook readability</h3>
<div class="outline-text-3" id="text-org0359fd8"> <div class="outline-text-3" id="text-org4f61d38">
<p> <p>
Here are two interesting extensions that can improve readability: Here are two interesting extensions that can improve readability:
</p> </p>
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