Traduction de l'analyse du syndrome grippal en snakemake

module6/ressources/incidence_syndrome_grippal_snakemake/Snakefile

@@ -9,7 +9,7 @@ rule preprocess:
         "data/weekly-incidence.csv"
      output:
         data="data/preprocessed-weekly-incidence.csv",
-        errorlog="data/errors-from-preprocessing.csv"
+        errorlog="data/errors-from-preprocessing.txt"
      script:
         "scripts/preprocess.py"
 

module6/ressources/incidence_syndrome_grippal_snakemake/scripts/preprocess.py

@@ -64,5 +64,6 @@ with open(snakemake.output.errorlog, "a") as errorlog:
 #  2. the incidence estimate for that week
 with open(snakemake.output.data, "w") as csvfile:
     csv_writer = csv.writer(csvfile)
+    csv_writer.writerow(["week_starting", "incidence"])
     for row in converted_data:
         csv_writer.writerow(row)