Updated logbook_RR_MOOC.md with module 1

journal/logbook_RR_MOOC.md

@@ -3,7 +3,7 @@
 This logbook will contain the main points I learnt and found useful in this MOOC, 
 as well as some usefull references and resources.
 
-## Module 1
+## Module 1: note books and lab books
 
 ### 20.03.20 - 24.03.20
 
@@ -27,3 +27,23 @@ Things I would like to figure out:
     * what is this "No wrap"/"Soft wrap" button? *It just does automatic cut of the lines si everything can fit on the screen*
 
 **There is an obvious lack of structure in this section!**
+
+## Module 2: computational documents
+
+### 25.03.20
+
+What is needed for a study to be reproducible?
+
+* The data should and the way they were collected should be available
+* Each choice made in the methodology should be explained justified : all this should be ketp in the lab book
+
+Le clique boutton, les tableurs et les logiciels propriétaires c'est pas top!
+
+**Be organized, and store your data, randomize your experimental design, use text format, use free software!**
+
+It sunny and I just realised that I can ear the church bell from my garden. Ah yeah, btw... COVID-19
+
+#### Rstudio tutorial
+I choose to follow the Rstudio tutorial even if I already know how to produce Rmarkdown files, but it would be cool to try later OrgMode, so that I could use Emacs to do eveything (while fore now I am only using it to produce Latex documents).
+
+Something I didn't know: when you use another langage than R (for example when I use some pieces of bash/python for OBITOOLS pipelines), the variables generated in a chunck are not kept in memory and cannot be used from one chunk to another (which is the case for R code).