Commit 3d71fc67 authored by Laurence Farhi's avatar Laurence Farhi

remplacement de lien app-learninglab.inria.fr/gitlab par gitlab.inria.fr

parent 04f42b47
...@@ -209,7 +209,7 @@ mkdir -p ~/org/ ...@@ -209,7 +209,7 @@ mkdir -p ~/org/
Then copy =rr_org/journal.org= file in your =~/org/= directory. This Then copy =rr_org/journal.org= file in your =~/org/= directory. This
file will be your laboratory notebook and all the notes you will file will be your laboratory notebook and all the notes you will
capture with =C-c c= will go automatically go in this file. The first capture with =C-c c= will go automatically go in this file. The first
entry of this notebook is populated with [[https://app-learninglab.inria.fr/gitlab/learning-lab/mooc-rr-ressources/blob/master/module2/ressources/rr_org/journal.org][many Emacs shortcuts]] that you entry of this notebook is populated with [[https://gitlab.inria.fr/learninglab/mooc-rr/mooc-rr-ressources/blob/master/module2/ressources/rr_org/journal.org][many Emacs shortcuts]] that you
should give a try. should give a try.
** Step 2: Set up Emacs configuration ** Step 2: Set up Emacs configuration
Copy =rr_org/init.el= in your =~/.emacs.d/= directory. Copy =rr_org/init.el= in your =~/.emacs.d/= directory.
...@@ -249,7 +249,7 @@ worked. ...@@ -249,7 +249,7 @@ worked.
In the video, we already have demonstrated the main features and In the video, we already have demonstrated the main features and
shortcuts of emacs/org-mode that will help you maintain a document and shortcuts of emacs/org-mode that will help you maintain a document and
benefit from literate programming. The list of features and shortcuts benefit from literate programming. The list of features and shortcuts
is demonstrated in the [[https://app-learninglab.inria.fr/gitlab/learning-lab/mooc-rr-ressources/blob/master/module2/ressources/rr_org/journal.org][first entry of your labbook]]. is demonstrated in the [[https://gitlab.inria.fr/learninglab/mooc-rr/mooc-rr-ressources/blob/master/module2/ressources/rr_org/journal.org][first entry of your labbook]].
** Step 5: Open and play with your journal: ** Step 5: Open and play with your journal:
In step 1, you were told to create an journal in In step 1, you were told to create an journal in
=~org/journal.org=. First you probably want to make sure this file is =~org/journal.org=. First you probably want to make sure this file is
...@@ -266,7 +266,7 @@ open a terminal and run the commands =R=, =pdflatex=, and =python=, you will not ...@@ -266,7 +266,7 @@ open a terminal and run the commands =R=, =pdflatex=, and =python=, you will not
able to generate this document. When being compiled, the article downloads the able to generate this document. When being compiled, the article downloads the
corresponding LaTeX packages so you also need to have a working =wget= corresponding LaTeX packages so you also need to have a working =wget=
command (alternatively, it uses =curl=). Once downloaded, you may still read the command (alternatively, it uses =curl=). Once downloaded, you may still read the
source ([[https://app-learninglab.inria.fr/gitlab/learning-lab/mooc-rr-ressources/blob/master/module2/ressources/replicable_article/article.org][article.org]]) and understand how it works though. source ([[https://gitlab.inria.fr/learninglab/mooc-rr/mooc-rr-ressources/blob/master/module2/ressources/replicable_article/article.org]]) and understand how it works though.
#+begin_src shell :results output :exports none #+begin_src shell :results output :exports none
make -C replicable_article/ all ../replicable_article.tgz make -C replicable_article/ all ../replicable_article.tgz
...@@ -275,7 +275,7 @@ make -C replicable_article/ all ../replicable_article.tgz ...@@ -275,7 +275,7 @@ make -C replicable_article/ all ../replicable_article.tgz
#+RESULTS: #+RESULTS:
Download the following [[https://gitlab.inria.fr/learninglab/mooc-rr/mooc-rr-ressources/replicable_article.tgz][archive]], uncompress it and simply =make= to generate the Download the following [[https://gitlab.inria.fr/learninglab/mooc-rr/mooc-rr-ressources/replicable_article.tgz][archive]], uncompress it and simply =make= to generate the
article. You should then be able to open the [[https://app-learninglab.inria.fr/gitlab/learning-lab/mooc-rr-ressources/blob/master/module2/ressources/replicable_article/article.pdf][resulting article]]. This article. You should then be able to open the [[https://gitlab.inria.fr/learninglab/mooc-rr/mooc-rr-ressources/blob/master/module2/ressources/replicable_article/article.pdf][resulting article]]. This
is summarized in the following command: is summarized in the following command:
#+begin_src sh :results output :exports both #+begin_src sh :results output :exports both
wget --no-check-certificate -O replicable_article.tgz https://gitlab.inria.fr/learninglab/mooc-rr/mooc-rr-ressources/replicable_article.tgz wget --no-check-certificate -O replicable_article.tgz https://gitlab.inria.fr/learninglab/mooc-rr/mooc-rr-ressources/replicable_article.tgz
...@@ -296,7 +296,7 @@ tar zxf replicable_article.tgz; cd replicable_article; make ; evince article.pdf ...@@ -296,7 +296,7 @@ tar zxf replicable_article.tgz; cd replicable_article; make ; evince article.pdf
command line to load your personal emacs configuration. command line to load your personal emacs configuration.
Finally, when you'll be tired of always re-executing all the source Finally, when you'll be tired of always re-executing all the source
code when exporting, just look for the following line in [[https://app-learninglab.inria.fr/gitlab/learning-lab/mooc-rr-ressources/blob/master/module2/ressources/replicable_article/article.org][article.org]]: code when exporting, just look for the following line in [[https://gitlab.inria.fr/learninglab/mooc-rr/mooc-rr-ressources/blob/master/module2/ressources/replicable_article/article.org][article.org]]:
#+BEGIN_EXAMPLE #+BEGIN_EXAMPLE
# #+PROPERTY: header-args :eval never-export # #+PROPERTY: header-args :eval never-export
#+END_EXAMPLE #+END_EXAMPLE
...@@ -310,12 +310,12 @@ Learning Emacs and Org-Mode can be difficult as there is an inordinate ...@@ -310,12 +310,12 @@ Learning Emacs and Org-Mode can be difficult as there is an inordinate
amount of shortcuts. Many people have thus come up with amount of shortcuts. Many people have thus come up with
cheat-sheats. Here is a selection in case it helps: cheat-sheats. Here is a selection in case it helps:
*** Emacs *** Emacs
- [[https://app-learninglab.inria.fr/gitlab/learning-lab/mooc-rr-ressources/blob/master/module2/ressources/rr_org/journal.org][Common and step-by-step Emacs shortcuts for our /reproducible research/ configuration]] - [[https://gitlab.inria.fr/learninglab/mooc-rr/mooc-rr-ressources/blob/master/module2/ressources/rr_org/journal.org][Common and step-by-step Emacs shortcuts for our /reproducible research/ configuration]]
- [[https://www.gnu.org/software/emacs/refcards/pdf/refcard.pdf][The official GNU emacs refcard]] - [[https://www.gnu.org/software/emacs/refcards/pdf/refcard.pdf][The official GNU emacs refcard]]
- Two graphical cheat-sheats by Sacha Chua on [[http://sachachua.com/blog/wp-content/uploads/2013/05/How-to-Learn-Emacs-v2-Large.png][how to learn Emacs]] and on - Two graphical cheat-sheats by Sacha Chua on [[http://sachachua.com/blog/wp-content/uploads/2013/05/How-to-Learn-Emacs-v2-Large.png][how to learn Emacs]] and on
[[http://sachachua.com/blog/wp-content/uploads/2013/08/20130830-Emacs-Newbie-How-to-Learn-Emacs-Keyboard-Shortcuts.png][how to learn Emacs shortcuts]]. [[http://sachachua.com/blog/wp-content/uploads/2013/08/20130830-Emacs-Newbie-How-to-Learn-Emacs-Keyboard-Shortcuts.png][how to learn Emacs shortcuts]].
*** Org-mode *** Org-mode
- [[https://app-learninglab.inria.fr/gitlab/learning-lab/mooc-rr-ressources/blob/master/module2/ressources/rr_org/journal.org][Common and step-by-step org-mode shortcuts for our /reproducible research/ configuration]] - [[https://gitlab.inria.fr/learninglab/mooc-rr/mooc-rr-ressources/blob/master/module2/ressources/rr_org/journal.org][Common and step-by-step org-mode shortcuts for our /reproducible research/ configuration]]
- [[https://orgmode.org/worg/orgcard.html][The official org-mode refcard]] - [[https://orgmode.org/worg/orgcard.html][The official org-mode refcard]]
- [[https://orgmode.org/worg/dev/org-syntax.html][The official description of the org-mode syntax]] and a [[https://gist.github.com/hoeltgman/3825415][relatively concise description of the org-mode syntax]]. - [[https://orgmode.org/worg/dev/org-syntax.html][The official description of the org-mode syntax]] and a [[https://gist.github.com/hoeltgman/3825415][relatively concise description of the org-mode syntax]].
** Video tutorials ** Video tutorials
......
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